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B0RIW1 (B0RIW1_CLAMS) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Beta-galactosidase EMBL CAQ02748.1
EC=3.2.1.23 EMBL CAQ02748.1
Gene names
Name:bga EMBL CAQ02748.1
Ordered Locus Names:CMS2675
OrganismClavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ02748.1
Taxonomic identifier31964 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length615 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionGlycosidase EMBL CAQ02748.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionbeta-galactosidase activity

Inferred from electronic annotation. Source: EC

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B0RIW1 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: A626D2E3F0CEFE42

FASTA61566,911
        10         20         30         40         50         60 
MSRTSPLPCP ALTQGHDMPG LPASSARFRI GADDFELDGR PHRVIAGALH YFRVHPDQWA 

        70         80         90        100        110        120 
DRIRKARLMG LDTIETYVAW NAHSPERGTF DTSAGLDLGR FLDLVHAEGM HAIVRPGPYI 

       130        140        150        160        170        180 
CAEWDGGGLP GWLFGDPAVG VRRSEPLYLA AVDEFLRRVY EIVAPRQIDM GGPVILVQIE 

       190        200        210        220        230        240 
NEYGAYGDDA EYLRHLVDLT RESGIIVPLT TVDQPTDEML SRGSLDELHR TGSFGSRAAE 

       250        260        270        280        290        300 
RLETLRRHQR TGPLMCSEFW DGWFDHWGEH HHTTSAADAA AELDALLAAG ASVNIYMFHG 

       310        320        330        340        350        360 
GTNFGFTNGA NHKGTYQSHV TSYDYDAPLD ETGSPTEKYF AFRDVIARYR SVPDEVPTRR 

       370        380        390        400        410        420 
GDAPAFKVAF DAAVPLADLV ADADAWRATD AVPSMDALGV FRGFALHRVE LPASDRTRVL 

       430        440        450        460        470        480 
AFGEVRDRAV VSVDGVRVGV IQRDQHETAI AVPPGRILEV LVEDQGRVNY GVRIGEAKGL 

       490        500        510        520        530        540 
IGPATLDGRE LTGWESLPLD LGAMAASVSS AASFAASSVA EPVRFLDGPV LAHATFDVDA 

       550        560        570        580        590        600 
PADLFLDTRS WGKGVAFVNG FALGRYWTRG PQHTLYVPGA QLRAGRNDLV VFETGAAADP 

       610 
VVAFLAQPEL GHLES

« Hide

References

[1]"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation."
Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A.
J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AM849034 Genomic DNA. Translation: CAQ02748.1.
RefSeqYP_001711316.1. NC_010407.1.

3D structure databases

ProteinModelPortalB0RIW1.
ModBaseSearch...

Protein-protein interaction databases

STRINGB0RIW1.

Protein family/group databases

CAZyGH35. Glycoside Hydrolase Family 35.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6158224.
GenomeReviewsGene locus CMS2675 in contig AM849034_GR.
KEGGcms:CMS_2675.
PATRIC21462371. VBIClaMic4666_2722.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG292753.
OMAQHETAIA.
ProtClustDBCLSK881272.

Family and domain databases

InterProIPR008979. Galactose-bd-like.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KOK12308.
PANTHERPTHR23421. Glyco_hydro_35. 1 hit.
PfamPF01301. Glyco_hydro_35. 1 hit.
[Graphical view]
PRINTSPR00742. GLHYDRLASE35.
SUPFAMSSF49785. Gal_bind_like. 1 hit.
SSF51445. Glyco_hydro_cat. 1 hit.
PROSITEPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB0RIW1_CLAMS
AccessionPrimary (citable) accession number: B0RIW1
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: January 25, 2012
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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