B0RIK2 (B0RIK2_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase III alpha chain EMBL CAQ01493.1
EC=2.7.7.7 EMBL CAQ01493.1

Gene names

Name:	dnaE EMBL CAQ01493.1
Ordered Locus Names:	CMS1382

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ01493.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	1170 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Catalytic activity

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). SAAS SAAS004013

Ontologies

Keywords
Biological process	DNA replication SAAS SAAS004013
Cellular component	Cytoplasm SAAS SAAS004013
Molecular function	DNA-directed DNA polymerase SAAS SAAS004013 Nucleotidyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	3'-5' exonuclease activity Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed DNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0RIK2 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: 2546FB44036D2001	FASTA	1,170	129,372
	10 20 30 40 50 60 MPRNDSFVHL HVHSEYSMLD GAARVGPLVQ AAAEQGMPAV AITDHGNVFG AFDFWKQAKA 70 80 90 100 110 120 AGVKPIIGTE AYITPGTHRG DRTRIRWGNG GQDDVSGSGA YTHLTMLAET TEGMHNLFRL 130 140 150 160 170 180 SSRASLEGYY FKPRMDRELL STYAKGLIAT TGCPSGEVQT RLRLGQYDEA VKAAADFRDI 190 200 210 220 230 240 FGAENYFCEV MDHGLGIERR IMTDLHRLAK DLGLPLVATN DLHYTHEHDA TSHAALLCVQ 250 260 270 280 290 300 SGTTLDDPNR FKFDADEFYL KTAQQMRHLF RDHEEACDNT LLIAERCDVQ FNESANYMPR 310 320 330 340 350 360 YPVPEGESEQ TWFVKEVERG LVRRYPRGFS DDVRKRADYE VGVIAQMGFP GYFLVVADFI 370 380 390 400 410 420 NWSKENGIRV GPGRGSGAGS MVAYAMGITD LDPLEHGLLF ERFLNPDRVS MPDFDVDFDD 430 440 450 460 470 480 RRRGEVIRYV TDKYGDERVA QIVTYGTIKA KQALKDSSRV LGYPFSMGDK LTKAMPPAIM 490 500 510 520 530 540 GKDIPLSGIL DTEHPRYREA GDFREVLAMD PEAQKVFETA QGIENLKRQW GVHAAGVIMS 550 560 570 580 590 600 SEPLIDIIPI MKREQDGQIV TQFDYPACES LGLIKMDFLG LRNLTIIDDA LNNIESNRGE 610 620 630 640 650 660 KLVLEDLGLD DQGAYDLLAR GDTLGVFQLD GGPMRSLLRM MKPDNFEDIS AVIALYRPGP 670 680 690 700 710 720 MGANSHTNYA LRKNGLQEIT PIHPELEEPL REVLGTTHGL IVYQEQVMSV AQKLAGFTLA 730 740 750 760 770 780 QADLLRRAMG KKKKSELDKQ FEGFSQGMKD NGYSMAAVKA LWDILLPFSD YAFNKAHSAA 790 800 810 820 830 840 YGVVSYWTAY LKAHYPAEYM AALLTSVGDS KDKMALYLNE CRRMGIKVLP PDVNESIGFF 850 860 870 880 890 900 AAAGADIRFG LGAVRNVGAN VVEALRGART EQGAFESFDD FLKKVPLPVA NKRTVESLIK 910 920 930 940 950 960 AGAFDSLGDT RRALLEVHEG MIDASVSDKR AAMNGQVGFD FDSLWDEPQH ARKVPERPEW 970 980 990 1000 1010 1020 AKRDKLAFER EMLGLYVSDH PLAGLEIPLA KLASTGIAEL LATDASMDGE TVTLAGLLTS 1030 1040 1050 1060 1070 1080 VQHRTARNSG NQYGMVQLED FGGEITCMFM GKAYQEFAPA LQSDTVVVIR GRVSTRDDGM 1090 1100 1110 1120 1130 1140 NIHAFSMFQP DLGQSLGSGP LLISLAENRA TTETVMGLND VLIRHSGDTE VRLQLVKGDS 1150 1160 1170 GRVFEIPYPV TVSADLYGEL KSLLGPNCLG

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A. J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ01493.1.
RefSeq	YP_001710109.1. NC_010407.1.
3D structure databases
ProteinModelPortal	B0RIK2.
ModBase	Search...
Protein-protein interaction databases
STRING	B0RIK2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6158937.
GenomeReviews	Gene locus CMS1382 in contig AM849034_GR.
KEGG	cms:CMS_1382.
PATRIC	21459771. VBIClaMic4666_1443.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG734490.
OMA	RVLQMPY.
ProtClustDB	PRK05673.
Family and domain databases
InterPro	IPR011708. DNA_pol3_alpha. IPR004365. NA-bd_OB_tRNA-helicase. IPR004013. PHP_C. IPR003141. Pol/His_phosphatase_N. IPR016195. Pol/histidinol_Pase-like. IPR004805. PolC_alpha. [Graphical view]
KO	K02337.
Pfam	PF07733. DNA_pol3_alpha. 1 hit. PF02811. PHP. 1 hit. PF01336. tRNA_anti. 1 hit. [Graphical view]
SMART	SM00481. POLIIIAc. 1 hit. [Graphical view]
SUPFAM	SSF89550. PHP-like. 1 hit.
TIGRFAMs	TIGR00594. Polc. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B0RIK2_CLAMS

Accession

Primary (citable) accession number: B0RIK2

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	December 14, 2011
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)