B0RIE1 (B0RIE1_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribulokinase HAMAP MF_00520
EC=2.7.1.16 HAMAP MF_00520

Gene names

Name:	araB HAMAP MF_00520
Ordered Locus Names:	CMS0131

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ00255.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	562 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520
Sequence similarities	Belongs to the ribulokinase family. HAMAP MF_00520

Ontologies

Keywords
Biological process	Arabinose catabolism HAMAP MF_00520 Carbohydrate metabolism
Ligand	ATP-binding HAMAP MF_00520 Nucleotide-binding
Molecular function	Kinase HAMAP MF_00520 EMBL CAQ00255.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0RIE1 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: 488BA255D07C3436	FASTA	562	59,684
	10 20 30 40 50 60 MSTAAEAQPS TEAESYVIGV DYGTLSGRAV VVRVSDGVEL GSGVLDYPHA VMDDTLAATG 70 80 90 100 110 120 AQLPPEWALQ VPSDYVDVLK QAVPAAIREA GIDPARVIGI GTDFTACTMV PTLADGTPLN 130 140 150 160 170 180 EVEGYADRPH AYVKLWKHHA AQSHADRINA LAEERGEKWL ARYGGLISSE WEFAKGLQLL 190 200 210 220 230 240 EEDPELYGLM DHWVEAADWI VWQLTGSYVR NACTAGYKGI LQDGEYPTPE FLGALNPGFA 250 260 270 280 290 300 SFAEEKVAHE IGQLGSAAGT LSAEAAAWTG LPEGIAVAVG NVDAHVTAPV ARAVEPGQMV 310 320 330 340 350 360 AIMGTSTCHV MNSDVLTEVP GMCGVVDGGI VSGLYGYEAG QSGVGDIFAW YVKNQVPARY 370 380 390 400 410 420 AEEAAAAGKS VHQHLTDLAA DQPVGGHGLV ALDWHSGNRS VLVDHELSGL VVGTTLTTRT 430 440 450 460 470 480 EEVYRALLEA TAFGTRKIVE TFGASGVPVT EFIVAGGLLK NAFLMQAYSD ILRLPISVIT 490 500 510 520 530 540 SEQGPALGSA IHAAVAAGAY PDVRVAGDAM GKVERGKYQP DEERALAYDR LYEEYSTLHD 550 560 YFGRGANDVM KRLKSLKREA RA

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A. J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ00255.1.
RefSeq	YP_001708919.1. NC_010407.1.
3D structure databases
ProteinModelPortal	B0RIE1.
ModBase	Search...
Protein-protein interaction databases
STRING	B0RIE1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6156122.
GenomeReviews	Gene locus CMS0131 in contig AM849034_GR.
KEGG	cms:CMS_0131.
PATRIC	21457212. VBIClaMic4666_0182.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG312681.
OMA	YEAGQSC.
ProtClustDB	PRK04123.
Family and domain databases
HAMAP	MF_00520. Ribulokinase. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
KO	K00853.
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B0RIE1_CLAMS

Accession

Primary (citable) accession number: B0RIE1

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)