B0RG35 (B0RG35_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative secreted pectate lyase EMBL CAQ02326.1

Gene names

Ordered Locus Names:

CMS2234

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ02326.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	287 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL CAQ02326.1
Molecular function	Lyase EMBL CAQ02326.1
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	extracellular region Inferred from electronic annotation. Source: InterPro
Molecular function	pectate lyase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 47	47	Potential EMBL CAQ02326.1
	Chain	48 – 287	240	Potential EMBL CAQ02326.1		PRO_5000307564

Sequences

	Sequence		Length	Mass (Da)
	B0RG35 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: 1A4319ADFC787138	FASTA	287	29,605
	10 20 30 40 50 60 MPPPFPASAR LQATRPFRGR LGAVAAVTAV ALLALGLSLP QTAPAQAAGL PARGSSISDM 70 80 90 100 110 120 PAFPTPTHVA PAQSMPFLVK AGQTVDFHNQ ELNASTNGHG EFQEPVVLIE PGGIAENLII 130 140 150 160 170 180 GPLAGDGIHC QASCTLINIW WPHVGEDAVT LLDGSPASSV VTIRGGAVAH AYDKVVQLDG 190 200 210 220 230 240 AGTARFSDFA ASDIGTLARS CGNCPNQYTR HIVISNVFIT GGKYKVAGVN QNFGDTATLD 250 260 270 280 HVTIHGVHMQ VCDRTIGGRG TAAKPVPGAG GPFPPYCVFD PGTILYS

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A. J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ02326.1.
RefSeq	YP_001710910.1. NC_010407.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B0RG35.
Protein family/group databases
CAZy	PL3. Polysaccharide Lyase Family 3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6157864.
GenomeReviews	Gene locus CMS2234 in contig AM849034_GR.
KEGG	cms:CMS_2234.
PATRIC	21461523. VBIClaMic4666_2305.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG418288.
OMA	SATITNV.
ProtClustDB	CLSK971419.
Family and domain databases
InterPro	IPR004898. Pectate_lyase_cat. IPR012334. Pectin_lyas_fold. IPR011050. Pectin_lyase_fold/virulence. [Graphical view]
Gene3D	G3DSA:2.160.20.10. Pectin_lyas_fold. 1 hit.
Pfam	PF03211. Pectate_lyase. 1 hit. [Graphical view]
SUPFAM	SSF51126. Pectin_lyas_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B0RG35_CLAMS

Accession

Primary (citable) accession number: B0RG35

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	December 14, 2011
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)