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B0RFJ4 (B0RFJ4_CLAMS) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative levanase EMBL CAQ01054.1
Gene names
Ordered Locus Names:CMS0939
OrganismClavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ01054.1
Taxonomic identifier31964 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length689 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL CAQ01054.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionhydrolase activity, hydrolyzing O-glycosyl compounds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 4141 Potential EMBL CAQ01054.1
Chain42 – 689648 Potential EMBL CAQ01054.1
PRO_5000307539

Sequences

Sequence LengthMass (Da)Tools
B0RFJ4 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: 006EBD3E2D2F9007

FASTA68973,654
        10         20         30         40         50         60 
MESARPPLAP RTAHPRGRMA ALAAAAALVC ALAVPASSAT AEPTVPADGF ADGFAADADR 

        70         80         90        100        110        120 
YRAQYHFTVP DHWKNDPQRP VVIDGVTHYY YLYNADYDQE VGTSWRLATT TDGVAWADQG 

       130        140        150        160        170        180 
IAAEKKTNPN FDLWSGSAVV DPEGTAGFGR GAVVMLVTQM DHPTPQQIVD ASGPQAQFLW 

       190        200        210        220        230        240 
YSTDGGRTFT PSGEEAVLPN PGVRDFRDPK VVWDDERGSW VMLIAEGATL SFSTSPDLRS 

       250        260        270        280        290        300 
WTRVSTFAAD GLGVLECPDL FRITADDGTS KWVLGASANG YATGEPNTYA YWTGSFDGRA 

       310        320        330        340        350        360 
FVPDPGTGHR WLDQGFDWYG AVTWADPTAQ HEERRLAVGW MNNWSYPKAG PTWESDGFTG 

       370        380        390        400        410        420 
TDSITREIRL ARADGGYRLL SQPIAALAGH ATSVRELGPV RVDGSVVLPY AGTAYQLETE 

       430        440        450        460        470        480 
IAWDRLDNVG LQLRRSADGS RHADVGVFRD TLYANRGGTG NPDPTGNKLE SRSPFDASAK 

       490        500        510        520        530        540 
EVKLRILVDR TTVEVFVDYG EVVHSSQVFA EPADAGIALF TQGGAATFSN LRITEFADLA 

       550        560        570        580        590        600 
QRPAHVLADF EGTTAGVGWT GTGDLVGLAP NGSPLVGRVG RQALDTYVPG RGDAATGTLT 

       610        620        630        640        650        660 
SPPFTIDRDA IHLLIAGGDH GLGAEPATSV NLLVDGEPVR TATGDDSAKL RPVAWDVSDL 

       670        680 
AGRTARIQVL DDATGAWGHL MVDQVMLAD

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References

[1]"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation."
Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A.
J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AM849034 Genomic DNA. Translation: CAQ01054.1.
RefSeqYP_001709688.1. NC_010407.1.

3D structure databases

ProteinModelPortalB0RFJ4.
ModBaseSearch...

Protein-protein interaction databases

STRINGB0RFJ4.

Protein family/group databases

CAZyCBM38. Carbohydrate-Binding Module Family 38.
GH32. Glycoside Hydrolase Family 32.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6156848.
GenomeReviewsGene locus CMS0939 in contig AM849034_GR.
KEGGcms:CMS_0939.
PATRIC21458882. VBIClaMic4666_1002.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG693902.
OMAMRADDGT.
ProtClustDBCLSK882933.

Family and domain databases

InterProIPR008985. ConA-like_lec_gl.
IPR001362. Glyco_hydro_32.
IPR013189. Glyco_hydro_32_C.
IPR013148. Glyco_hydro_32_N.
IPR023296. Glyco_hydro_43_beta-prop.
[Graphical view]
KOK01212.
PfamPF08244. Glyco_hydro_32C. 1 hit.
PF00251. Glyco_hydro_32N. 1 hit.
[Graphical view]
SMARTSM00640. Glyco_32. 1 hit.
[Graphical view]
SUPFAMSSF49899. ConA_like_lec_gl. 1 hit.
SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB0RFJ4_CLAMS
AccessionPrimary (citable) accession number: B0RFJ4
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: January 25, 2012
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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