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B0RFE8 (B0RFE8_CLAMS) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alpha-galactosidase EMBL CAQ01007.1
EC=3.2.1.22 EMBL CAQ01007.1
Gene names
Name:rafA EMBL CAQ01007.1
Ordered Locus Names:CMS0891
OrganismClavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ01007.1
Taxonomic identifier31964 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length727 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionGlycosidase EMBL CAQ01007.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionraffinose alpha-galactosidase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B0RFE8 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: EFBC38091A6B9090

FASTA72779,051
        10         20         30         40         50         60 
MPDTAVPSAL LHLRASGVSL VLDLTEGRLP AVVHWGADLG DTTPADLETM VRADLAPFAG 

        70         80         90        100        110        120 
SVADDPIRLA ILPEAHTSWT GKPGLEGHRD GADWSPLFRV TSATVDGDPL PVGVDGRPGS 

       130        140        150        160        170        180 
ASTGPALVHV DAVDEVAGLG LALDVELLAS GLVRKRAEAT NLGDTTYDLG GVTLALPLPP 

       190        200        210        220        230        240 
EAREILDFAG RWGLERTPQR RELVVGIHER EGRKGRTGPD AATLLSVGTP GFGFRHGDVR 

       250        260        270        280        290        300 
GVHVAFSGNH RHYAERLSTG RQVIGGGELL LPGEVRLAAG ESYASPWVYA AFGHGLDDQA 

       310        320        330        340        350        360 
ARFHRHLRAR ETHPRRDRPM TINVWEAVYF DHDLARLTDL ADRAAALGVE RYVLDDGWFR 

       370        380        390        400        410        420 
HRRDDHAGLG DWYLDEGVWP DGLGPIIDHV TGLGMEFGLW FEPEMVNEDS DLARAYPEWI 

       430        440        450        460        470        480 
MQTGGRLPVR ARQQQVLDLA IPEAYSYVLE RMTAILAEND IAYIKWDHNR DLVDAGISPR 

       490        500        510        520        530        540 
GQAGVHLQTL AAYRLMDELR ARFPGLEIES CSSGGARVDL GVLERTDRVW VSDCIDPLDR 

       550        560        570        580        590        600 
QTMMRWTMQL LPPELLGSHI ASGVSHTTGR AHRLAFRAGS ALYGHLGIEW DLAQATDEEN 

       610        620        630        640        650        660 
ADLAAWIALY KEERALMHTG TVVRADESDP TLLVYGAVAS SSDAALFFLA SVGRSEVSPR 

       670        680        690        700        710        720 
GRFLLPGLDP ARRYRVEPVR VDTPEPGFTA PAWWDGVELT GQALAASGLH APGMLPESIA 


ILRVTAV

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References

[1]"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation."
Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A.
J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AM849034 Genomic DNA. Translation: CAQ01007.1.
RefSeqYP_001709642.1. NC_010407.1.

3D structure databases

ProteinModelPortalB0RFE8.
ModBaseSearch...

Protein-protein interaction databases

STRINGB0RFE8.

Protein family/group databases

CAZyGH36. Glycoside Hydrolase Family 36.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6156804.
GenomeReviewsGene locus CMS0891 in contig AM849034_GR.
KEGGcms:CMS_0891.
PATRIC21458778. VBIClaMic4666_0950.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG299823.
OMATPWLYAS.
ProtClustDBCLSK960242.

Family and domain databases

InterProIPR013785. Aldolase_TIM.
IPR002252. Glyco_hydro_36.
IPR000111. Glyco_hydro_GHD.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK07407.
PfamPF02065. Melibiase. 1 hit.
[Graphical view]
PIRSFPIRSF005536. Agal. 1 hit.
PRINTSPR00743. GLHYDRLASE36.
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
PROSITEPS00512. ALPHA_GALACTOSIDASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB0RFE8_CLAMS
AccessionPrimary (citable) accession number: B0RFE8
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: December 14, 2011
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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