B0RF83 (B0RF83_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative dehydrogenase complex protein EMBL CAQ02168.1

Gene names

Ordered Locus Names:

CMS2072

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ02168.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	1268 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Molecular function	oxoglutarate dehydrogenase (succinyl-transferring) activity Inferred from electronic annotation. Source: InterPro thiamine pyrophosphate binding Inferred from electronic annotation. Source: InterPro transferase activity, transferring acyl groups Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0RF83 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: C90133DFB8DEE9BC	FASTA	1,268	139,670
	10 20 30 40 50 60 MTGTGTDDGS TGDFGANEWL VDEMYERFVV DKDSVDRSWW PILENYHTTV IEGREATPAT 70 80 90 100 110 120 GDQTAEAQIP DTESTSAPAT TNTGSPAPTP APASAGQPDA QAQQPATGSQ PAARTTSIAP 130 140 150 160 170 180 KQQPIPAQAP AKAPAKKGQE PTPPGEDEVS PLRGMAKSLA TNMDASLTIP TATSVRTIPA 190 200 210 220 230 240 KLMIDNRIVI NNHLKRARGG KVSFTHLIGW ALIQALKEFP SQNVHYDEVD GKPSVVSPAH 250 260 270 280 290 300 INLGIAIDMP KPDGTRALLV PSIKGAEAMT FGEFLSAYED LVKKARGNKL AAGDFAGTTI 310 320 330 340 350 360 SLTNPGGIGT VHSVPRLMKG QGAIIGAGAL EYPAEFQGSS PKTLVELGIG KTITLTSTYD 370 380 390 400 410 420 HRVIQGAGSG EFLKIVHERL IGQHGFYEDI FAALRIPYDP IQWATDINVD LSERVSKTSR 430 440 450 460 470 480 VQELINAYRV RGHLMADIDP LEYQQRTHPD LEITNHGLTF WDLDREFVTD GFGGRRQALL 490 500 510 520 530 540 RDVLGILRDS YCRTIGIEYM HIQQPDERRW IQGKVEQPYA KPTHDEQMRI LSKLNESEAF 550 560 570 580 590 600 ETFLQTKYVG QKRFSLEGGE STISLLDTLL QGAADHGLDE VAIGMAHRGR LNVLTNIAGK 610 620 630 640 650 660 SYGQIFREFE GTQDPRTVQG SGDVKYHLGT EGTFRGVHGE EMPVYLAANP SHLEAVNGVL 670 680 690 700 710 720 EGIVRAKQDR KPIGSFSVLP ILVHGDASMA GQGVVFETLQ LSQLRAYRTG GTVHIVINNQ 730 740 750 760 770 780 VGFTTPPSES RSSVYSTDVA KSIQAPIFHV NGDDPEAVAR VAHLAFEFRQ EFKKDVVIDL 790 800 810 820 830 840 VCYRRRGHNE GDDPSMTQPL MYNLIEAKRS VRKLYTEALV GRGDITQEEY DAAQKDFQDR 850 860 870 880 890 900 LERAFAETHA AQTSSIPIQT DDAGAVSDLE RPDSQQDDGH GEPETTGVSE AVIHSIGDAH 910 920 930 940 950 960 DNPPQGFSVH PKLQALMRKR LEMSRSGSID WAFGELLAIG SLLLENTPVR LAGQDSRRGT 970 980 990 1000 1010 1020 FVQRHAVLHD RDNGQEWLPL ANLSDRQARF WIYDTLLSEY AAMGFEYGYS VERPDALVLW 1030 1040 1050 1060 1070 1080 EAQFGDFANG AQTIIDEFIS SAEQKWGQRS SVVLLLPHGY EGQGPDHSSA RIERFLQLCA 1090 1100 1110 1120 1130 1140 EQNMTVARPS TPASYFHLLR RQAYSRPRRP LVVFTPKAML RLRGATSDVE AFTSGRFEPV 1150 1160 1170 1180 1190 1200 IDDVRIEDRG AVRRVLLHSG KVHYDLLGEL EKRQDRSIAL VRLEQFYPFP EEQVRRVVES 1210 1220 1230 1240 1250 1260 YPDAEVVWVQ DEPENQGAWP FVHVEFGRVL PDRAVRVVSR PAAASPAAGS SKRHATEQTD LIARATAE

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A. J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ02168.1.
RefSeq	YP_001710762.1. NC_010407.1.
3D structure databases
ProteinModelPortal	B0RF83.
ModBase	Search...
Protein-protein interaction databases
STRING	B0RF83.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6157725.
GenomeReviews	Gene locus CMS2072 in contig AM849034_GR.
KEGG	cms:CMS_2072.
PATRIC	21461181. VBIClaMic4666_2134.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG289950.
OMA	EGDEPAF.
ProtClustDB	PRK12270.
Family and domain databases
InterPro	IPR001078. 2-oxoacid_DH_actylTfrase. IPR011603. 2oxoglutarate_DH_E1. IPR023213. CAT-like_dom. IPR001017. DH_E1. IPR005475. Transketolase-like_Pyr-bd. [Graphical view]
Gene3D	G3DSA:3.30.559.10. CAT-like_dom. 1 hit.
KO	K00164.
PANTHER	PTHR23152. 2oxoglutarate_DH_E1. 1 hit.
Pfam	PF00198. 2-oxoacid_dh. 1 hit. PF00676. E1_dh. 1 hit. PF02779. Transket_pyr. 1 hit. [Graphical view]
PIRSF	PIRSF000157. Oxoglu_dh_E1. 1 hit.
SMART	SM00861. Transket_pyr. 1 hit. [Graphical view]
TIGRFAMs	TIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B0RF83_CLAMS

Accession

Primary (citable) accession number: B0RF83

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	January 25, 2012
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)