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B0REN6 (B0REN6_CLAMS) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Ribonuclease HII EMBL CAQ00883.1
EC=3.1.26.4 EMBL CAQ00883.1
Gene names
Name:rnhB EMBL CAQ00883.1
Ordered Locus Names:CMS0763
OrganismClavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ00883.1
Taxonomic identifier31964 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length219 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionHydrolase EMBL CAQ00883.1
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular functionRNA binding

Inferred from electronic annotation. Source: InterPro

ribonuclease H activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B0REN6 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: 4AB5CF3E906ECF46

FASTA21922,860
        10         20         30         40         50         60 
MPVADPTFEI EHELLGAGAA LVIGCDEVGR GALAGPVAVG MAAVGPDADA FPVGLRDSKM 

        70         80         90        100        110        120 
LSEKRREALH PLVSAWAGHS AVGMASAEEV DALGITACLG LAGRRALVEL HHLGVPLLDS 

       130        140        150        160        170        180 
VVLLDGSHDW LTPALVHPVP VRLRVKADRD CASVAAASVL AKVHRDRLMA AWHEESPEYG 

       190        200        210 
WAGNKGYGSP AHLDVIRANG ASRIHRRTWL TGVLASPGA

« Hide

References

[1]"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation."
Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A.
J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AM849034 Genomic DNA. Translation: CAQ00883.1.
RefSeqYP_001709526.1. NC_010407.1.

3D structure databases

ProteinModelPortalB0REN6.
ModBaseSearch...

Protein-protein interaction databases

STRINGB0REN6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6158990.
GenomeReviewsGene locus CMS0763 in contig AM849034_GR.
KEGGcms:CMS_0763.
PATRIC21458528. VBIClaMic4666_0825.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG584843.
OMADGKHDYL.
ProtClustDBPRK00015.

Family and domain databases

InterProIPR001352. RNase_HII/HIII.
IPR024567. RNase_HII/HIII_dom.
IPR012337. RNaseH-like_dom.
[Graphical view]
KOK03470.
PANTHERPTHR10954. RNase_HII/HIII. 1 hit.
PfamPF01351. RNase_HII. 1 hit.
[Graphical view]
SUPFAMSSF53098. RNaseH_fold. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB0REN6_CLAMS
AccessionPrimary (citable) accession number: B0REN6
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: January 25, 2012
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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