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Protein

Superoxide dismutase

Gene

sodB

Organism
Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Enzyme and pathway databases

BioCyciCMIC31964:GJBN-1997-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodBImported
Ordered Locus Names:CMS1989Imported
OrganismiClavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum)Imported
Taxonomic identifieri31964 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicrococcalesMicrobacteriaceaeClavibacter
ProteomesiUP000001318 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi31964.CMS_1989.

Structurei

3D structure databases

ProteinModelPortaliB0REJ4.
SMRiB0REJ4. Positions 2-198.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0605.
KOiK04564.
OMAiYLHSIFW.
OrthoDBiEOG63NMNT.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B0REJ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADYTLIDLP YDYSALEPSI SGRIMELHHD KHHKTYVDGA NTALVKLQEA
60 70 80 90 100
RDAGDLTFVN KLQKDLAFNL AGHVNHTVFW NNLSPDGGDK PTGELAAAID
110 120 130 140 150
EFFGSYDKFQ AHFTASALGI QGSGWSILAW DSLGQKLIIE QLYDHQGNLA
160 170 180 190 200
AATVPILLLD MWEHAFYLDY VNVKADYVKA FWNIVNWADV QARFDAARTK

TQGLFLLS
Length:208
Mass (Da):23,264
Last modified:April 8, 2008 - v1
Checksum:i6DF7296B47B79148
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM849034 Genomic DNA. Translation: CAQ02086.1.
RefSeqiWP_012299317.1. NC_010407.1.
YP_001710682.1. NC_010407.1.

Genome annotation databases

EnsemblBacteriaiCAQ02086; CAQ02086; CMS1989.
KEGGicms:CMS_1989.
PATRICi21461015. VBIClaMic4666_2052.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM849034 Genomic DNA. Translation: CAQ02086.1.
RefSeqiWP_012299317.1. NC_010407.1.
YP_001710682.1. NC_010407.1.

3D structure databases

ProteinModelPortaliB0REJ4.
SMRiB0REJ4. Positions 2-198.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi31964.CMS_1989.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAQ02086; CAQ02086; CMS1989.
KEGGicms:CMS_1989.
PATRICi21461015. VBIClaMic4666_2052.

Phylogenomic databases

eggNOGiCOG0605.
KOiK04564.
OMAiYLHSIFW.
OrthoDBiEOG63NMNT.

Enzyme and pathway databases

BioCyciCMIC31964:GJBN-1997-MONOMER.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation."
    Bentley S.D., Corton C., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., Brown S.E., Knudson D., Francis D., Parkhill P., Ishimaru C.
    J. Bacteriol. 190:2150-2160(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1Imported.

Entry informationi

Entry nameiB0REJ4_CLAMS
AccessioniPrimary (citable) accession number: B0REJ4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: June 24, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.