B0RD41 (B0RD41_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative alanine racemase fusion protein EMBL CAQ00640.1
EC=5.1.1.1 EMBL CAQ00640.1

Gene names

Name:	alr* EMBL CAQ00640.1
Ordered Locus Names:	CMS0521 EMBL CAQ00640.1

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ00640.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter › Clavibacter michiganensis

Protein attributes

Sequence length	578 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS020622
Molecular function	Isomerase SAAS SAAS020622 EMBL CAQ00640.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway threonylcarbamoyladenosine biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0RD41 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: C9CA589B45C5123E	FASTA	578	60,399
	10 20 30 40 50 60 MTEPASAPAS AGPVAPGRRA VIDLDAIRHN VRTLAALAAP ARTMVAVKAD AYGHGALQVA 70 80 90 100 110 120 RAALESGAES LAVLDVASAV ELRRAGIDAR LLAWLHGVDT DFRVAVEEEI DLGVSALWEL 130 140 150 160 170 180 KRIAAAGRAT GIRARVHLKA DTGLSRNGAT PELWPDLVRA AVAADSAGEL TLHALWSHLA 190 200 210 220 230 240 DASPEDDDAA LARFREAVRV AEELGARPVE KHLAASSAGI RLPAARFDMV RFGIAVYGIS 250 260 270 280 290 300 PFDDRSGRDL GLIPAMTLEA DVVSVKRVEA GHGVSYGLDH RTAGPSTLVL VPLGYADGIP 310 320 330 340 350 360 RIAAPRASVL LNGRRFPVAG RIAMDQLVLD VGDLPVEVGD TAVILGPGDR GEPTAEEWAG 370 380 390 400 410 420 WAETIGDEIV TRVGPRVDRV HLHERADADD PDGGGAAANG ATAEVLSDEL VPVATTDDME 430 440 450 460 470 480 ELGRAVAREL GAGDLVVLSG PLGAGKTTFT RGLGAGLGVR GPVTSPTFVL ARTHPSLVDG 490 500 510 520 530 540 PPLVHVDAYR LADARELDDL DIDFARSVVV VEWGEGKLDG VAEEWWELAI ARPTGAGDAD 550 560 570 PDAADGGHDG AHDASDPDAA PEEPRTVRIR RLRARPRA

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., Brown S.E., Knudson D., Francis D., Parkhill P., Ishimaru C. J. Bacteriol. 190:2150-2160(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33113 / JCM 9667.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ00640.1.
RefSeq	YP_001709292.1. NC_010407.1.
3D structure databases
ProteinModelPortal	B0RD41.
ModBase	Search...
Protein-protein interaction databases
STRING	31964.CMS_0521.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAQ00640; CAQ00640; CMS0521.
GeneID	6158594.
KEGG	cms:CMS_0521.
PATRIC	21458023. VBIClaMic4666_0580.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0802.
KO	K01775.
OMA	IRLPKAY.
ProtClustDB	CLSK838533.
Enzyme and pathway databases
BioCyc	CMIC31964:GJBN-529-MONOMER.
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. IPR003442. T6A_YjeE. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. PF02367. UPF0079. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit. TIGR00150. HI0065_YjeE. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0RD41_CLAMS

Accession

Primary (citable) accession number: B0RD41

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	May 1, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)