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B0RD41 (B0RD41_CLAMS) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length578 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. SAAS SAAS009006 HAMAP-Rule MF_01201

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS009006

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site481Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2761Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1461Substrate By similarity HAMAP-Rule MF_01201
Binding site3241Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue481N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
B0RD41 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: C9CA589B45C5123E

FASTA57860,399
        10         20         30         40         50         60 
MTEPASAPAS AGPVAPGRRA VIDLDAIRHN VRTLAALAAP ARTMVAVKAD AYGHGALQVA 

        70         80         90        100        110        120 
RAALESGAES LAVLDVASAV ELRRAGIDAR LLAWLHGVDT DFRVAVEEEI DLGVSALWEL 

       130        140        150        160        170        180 
KRIAAAGRAT GIRARVHLKA DTGLSRNGAT PELWPDLVRA AVAADSAGEL TLHALWSHLA 

       190        200        210        220        230        240 
DASPEDDDAA LARFREAVRV AEELGARPVE KHLAASSAGI RLPAARFDMV RFGIAVYGIS 

       250        260        270        280        290        300 
PFDDRSGRDL GLIPAMTLEA DVVSVKRVEA GHGVSYGLDH RTAGPSTLVL VPLGYADGIP 

       310        320        330        340        350        360 
RIAAPRASVL LNGRRFPVAG RIAMDQLVLD VGDLPVEVGD TAVILGPGDR GEPTAEEWAG 

       370        380        390        400        410        420 
WAETIGDEIV TRVGPRVDRV HLHERADADD PDGGGAAANG ATAEVLSDEL VPVATTDDME 

       430        440        450        460        470        480 
ELGRAVAREL GAGDLVVLSG PLGAGKTTFT RGLGAGLGVR GPVTSPTFVL ARTHPSLVDG 

       490        500        510        520        530        540 
PPLVHVDAYR LADARELDDL DIDFARSVVV VEWGEGKLDG VAEEWWELAI ARPTGAGDAD 

       550        560        570 
PDAADGGHDG AHDASDPDAA PEEPRTVRIR RLRARPRA 

« Hide

References

[1]"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation."
Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A.
J. Bacteriol. 190:2150-2160(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM849034 Genomic DNA. Translation: CAQ00640.1.
RefSeqYP_001709292.1. NC_010407.1.

3D structure databases

ProteinModelPortalB0RD41.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING31964.CMS_0521.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ00640; CAQ00640; CMS0521.
GeneID6158594.
KEGGcms:CMS_0521.
PATRIC21458023. VBIClaMic4666_0580.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0802.
KOK01775.
OMAITMDQLM.
OrthoDBEOG6PP9NJ.
ProtClustDBCLSK838533.

Enzyme and pathway databases

BioCycCMIC31964:GJBN-529-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
3.40.50.300. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR027417. P-loop_NTPase.
IPR003442. T6A_TsaE.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
PF02367. UPF0079. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
TIGR00150. T6A_YjeE. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB0RD41_CLAMS
AccessionPrimary (citable) accession number: B0RD41
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: April 16, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)