B0RD41 (B0RD41_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative alanine racemase fusion protein EMBL CAQ00640.1
EC=5.1.1.1 EMBL CAQ00640.1

Gene names

Name:	alr* EMBL CAQ00640.1
Ordered Locus Names:	CMS0521

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ00640.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	578 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. SAAS SAAS009006
Cofactor	Pyridoxal phosphate By similarity. SAAS SAAS009006
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS009006

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS009006
Molecular function	Isomerase SAAS SAAS009006 EMBL CAQ00640.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alanine metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0RD41 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: C9CA589B45C5123E	FASTA	578	60,399
	10 20 30 40 50 60 MTEPASAPAS AGPVAPGRRA VIDLDAIRHN VRTLAALAAP ARTMVAVKAD AYGHGALQVA 70 80 90 100 110 120 RAALESGAES LAVLDVASAV ELRRAGIDAR LLAWLHGVDT DFRVAVEEEI DLGVSALWEL 130 140 150 160 170 180 KRIAAAGRAT GIRARVHLKA DTGLSRNGAT PELWPDLVRA AVAADSAGEL TLHALWSHLA 190 200 210 220 230 240 DASPEDDDAA LARFREAVRV AEELGARPVE KHLAASSAGI RLPAARFDMV RFGIAVYGIS 250 260 270 280 290 300 PFDDRSGRDL GLIPAMTLEA DVVSVKRVEA GHGVSYGLDH RTAGPSTLVL VPLGYADGIP 310 320 330 340 350 360 RIAAPRASVL LNGRRFPVAG RIAMDQLVLD VGDLPVEVGD TAVILGPGDR GEPTAEEWAG 370 380 390 400 410 420 WAETIGDEIV TRVGPRVDRV HLHERADADD PDGGGAAANG ATAEVLSDEL VPVATTDDME 430 440 450 460 470 480 ELGRAVAREL GAGDLVVLSG PLGAGKTTFT RGLGAGLGVR GPVTSPTFVL ARTHPSLVDG 490 500 510 520 530 540 PPLVHVDAYR LADARELDDL DIDFARSVVV VEWGEGKLDG VAEEWWELAI ARPTGAGDAD 550 560 570 PDAADGGHDG AHDASDPDAA PEEPRTVRIR RLRARPRA

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A. J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ00640.1.
RefSeq	YP_001709292.1. NC_010407.1.
3D structure databases
ProteinModelPortal	B0RD41.
ModBase	Search...
Protein-protein interaction databases
STRING	B0RD41.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6158594.
GenomeReviews	Gene locus CMS0521 in contig AM849034_GR.
KEGG	cms:CMS_0521.
PATRIC	21458023. VBIClaMic4666_0580.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG712172.
OMA	TRKEDAN.
ProtClustDB	CLSK838533.
Family and domain databases
HAMAP	MF_01201. Ala_racemase. [Tree]
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. IPR003442. UPF0079_ATPase_bac. [Graphical view]
Gene3D	G3DSA:2.40.37.10. Ala_racemase/Decarboxylase_C. 1 hit.
KO	K01775.
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. PF02367. UPF0079. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. Alr. 1 hit. TIGR00150. HI0065_YjeE. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0RD41_CLAMS

Accession

Primary (citable) accession number: B0RD41

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	January 25, 2012
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)