Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

B0RD41

- B0RD41_CLAMS

UniProt

B0RD41 - B0RD41_CLAMS

Protein

Alanine racemase

Gene

alr*

Organism
Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (08 Apr 2008)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.UniRule annotation

    Catalytic activityi

    L-alanine = D-alanine.UniRule annotationSAAS annotation

    Cofactori

    Pyridoxal phosphate.UniRule annotationSAAS annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei48 – 481Proton acceptor; specific for D-alanineUniRule annotation
    Binding sitei146 – 1461SubstrateUniRule annotation
    Active sitei276 – 2761Proton acceptor; specific for L-alanineUniRule annotation
    Binding sitei324 – 3241Substrate; via amide nitrogenUniRule annotation

    GO - Molecular functioni

    1. alanine racemase activity Source: UniProtKB-HAMAP
    2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-alanine biosynthetic process Source: UniProtKB-UniPathway
    2. threonylcarbamoyladenosine biosynthetic process Source: InterPro

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciCMIC31964:GJBN-529-MONOMER.
    UniPathwayiUPA00042; UER00497.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
    Gene namesi
    Name:alr*Imported
    Ordered Locus Names:CMS0521Imported
    OrganismiClavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum)Imported
    Taxonomic identifieri31964 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrobacteriaceaeClavibacter
    ProteomesiUP000001318: Chromosome

    PTM / Processingi

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei48 – 481N6-(pyridoxal phosphate)lysineUniRule annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi31964.CMS_0521.

    Structurei

    3D structure databases

    ProteinModelPortaliB0RD41.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the alanine racemase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0802.
    KOiK01775.
    OMAiIYSHLAL.
    OrthoDBiEOG6PP9NJ.

    Family and domain databases

    Gene3Di2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    3.40.50.300. 1 hit.
    HAMAPiMF_01201. Ala_racemase.
    InterProiIPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR020622. Ala_racemase_pyridoxalP-BS.
    IPR027417. P-loop_NTPase.
    IPR029066. PLP-binding_barrel.
    IPR003442. T6A_TsaE.
    [Graphical view]
    PfamiPF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    PF02367. UPF0079. 1 hit.
    [Graphical view]
    PRINTSiPR00992. ALARACEMASE.
    SMARTiSM01005. Ala_racemase_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00492. alr. 1 hit.
    TIGR00150. T6A_YjeE. 1 hit.
    PROSITEiPS00395. ALANINE_RACEMASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B0RD41-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTEPASAPAS AGPVAPGRRA VIDLDAIRHN VRTLAALAAP ARTMVAVKAD    50
    AYGHGALQVA RAALESGAES LAVLDVASAV ELRRAGIDAR LLAWLHGVDT 100
    DFRVAVEEEI DLGVSALWEL KRIAAAGRAT GIRARVHLKA DTGLSRNGAT 150
    PELWPDLVRA AVAADSAGEL TLHALWSHLA DASPEDDDAA LARFREAVRV 200
    AEELGARPVE KHLAASSAGI RLPAARFDMV RFGIAVYGIS PFDDRSGRDL 250
    GLIPAMTLEA DVVSVKRVEA GHGVSYGLDH RTAGPSTLVL VPLGYADGIP 300
    RIAAPRASVL LNGRRFPVAG RIAMDQLVLD VGDLPVEVGD TAVILGPGDR 350
    GEPTAEEWAG WAETIGDEIV TRVGPRVDRV HLHERADADD PDGGGAAANG 400
    ATAEVLSDEL VPVATTDDME ELGRAVAREL GAGDLVVLSG PLGAGKTTFT 450
    RGLGAGLGVR GPVTSPTFVL ARTHPSLVDG PPLVHVDAYR LADARELDDL 500
    DIDFARSVVV VEWGEGKLDG VAEEWWELAI ARPTGAGDAD PDAADGGHDG 550
    AHDASDPDAA PEEPRTVRIR RLRARPRA 578
    Length:578
    Mass (Da):60,399
    Last modified:April 8, 2008 - v1
    Checksum:iC9CA589B45C5123E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM849034 Genomic DNA. Translation: CAQ00640.1.
    RefSeqiYP_001709292.1. NC_010407.1.

    Genome annotation databases

    EnsemblBacteriaiCAQ00640; CAQ00640; CMS0521.
    GeneIDi6158594.
    KEGGicms:CMS_0521.
    PATRICi21458023. VBIClaMic4666_0580.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM849034 Genomic DNA. Translation: CAQ00640.1 .
    RefSeqi YP_001709292.1. NC_010407.1.

    3D structure databases

    ProteinModelPortali B0RD41.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 31964.CMS_0521.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAQ00640 ; CAQ00640 ; CMS0521 .
    GeneIDi 6158594.
    KEGGi cms:CMS_0521.
    PATRICi 21458023. VBIClaMic4666_0580.

    Phylogenomic databases

    eggNOGi COG0802.
    KOi K01775.
    OMAi IYSHLAL.
    OrthoDBi EOG6PP9NJ.

    Enzyme and pathway databases

    UniPathwayi UPA00042 ; UER00497 .
    BioCyci CMIC31964:GJBN-529-MONOMER.

    Family and domain databases

    Gene3Di 2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    3.40.50.300. 1 hit.
    HAMAPi MF_01201. Ala_racemase.
    InterProi IPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR020622. Ala_racemase_pyridoxalP-BS.
    IPR027417. P-loop_NTPase.
    IPR029066. PLP-binding_barrel.
    IPR003442. T6A_TsaE.
    [Graphical view ]
    Pfami PF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    PF02367. UPF0079. 1 hit.
    [Graphical view ]
    PRINTSi PR00992. ALARACEMASE.
    SMARTi SM01005. Ala_racemase_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00492. alr. 1 hit.
    TIGR00150. T6A_YjeE. 1 hit.
    PROSITEi PS00395. ALANINE_RACEMASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation."
      Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A.
      J. Bacteriol. 190:2150-2160(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1Imported.

    Entry informationi

    Entry nameiB0RD41_CLAMS
    AccessioniPrimary (citable) accession number: B0RD41
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 8, 2008
    Last sequence update: April 8, 2008
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3