B0RD40 (B0RD40_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL CAQ00639.1
EC=5.1.1.1 EMBL CAQ00639.1

Gene names

Name:	alr EMBL CAQ00639.1
Ordered Locus Names:	CMS0520 EMBL CAQ00639.1

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ00639.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter › Clavibacter michiganensis

Protein attributes

Sequence length	385 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS020622 RuleBase RU000608
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL CAQ00639.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0RD40 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: 989F4D16F3258B92	FASTA	385	39,664
	10 20 30 40 50 60 MTDEATVQVP AALRREARID LGAISTNVRT LRAAAGAPLV MAVVKADGYG HGAVASARAA 70 80 90 100 110 120 LAGGADRLGV VDIREALALR AAGIEAPILT WMHAPYADFA TAIEAGIDLG LNSLRQVREA 130 140 150 160 170 180 AEAARRVGRT AEVHLKVDTG LGRNGVTPAE WPGVVAEVAA LVAEGRIHLG GVFSHLANAG 190 200 210 220 230 240 EDEDRAQVRA FHEAVDVVRA AGLEPGIRHL AATAGALRVP EARLDMVRLG IGIYGISPLD 250 260 270 280 290 300 GVTSADLGLV PAMTLVGSVV AVKRVPADTG VSYGYTYRTT SATTLALVSL GFADGVPRLA 310 320 330 340 350 360 SNRAPVAIHG ARFRVSGRIA MDQFVVDVGD GVVDGRPVAV GDDAVLFGDP ATGAPSVEEW 370 380 AEATGTIGYE IVARVAGRVT RRHSA

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., Brown S.E., Knudson D., Francis D., Parkhill P., Ishimaru C. J. Bacteriol. 190:2150-2160(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33113 / JCM 9667.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ00639.1.
RefSeq	YP_001709291.1. NC_010407.1.
3D structure databases
ProteinModelPortal	B0RD40.
ModBase	Search...
Protein-protein interaction databases
STRING	31964.CMS_0520.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAQ00639; CAQ00639; CMS0520.
GeneID	6158590.
KEGG	cms:CMS_0520.
PATRIC	21458021. VBIClaMic4666_0579.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0787.
KO	K01775.
OMA	PRIPRRY.
ProtClustDB	CLSK831463.
Enzyme and pathway databases
BioCyc	CMIC31964:GJBN-528-MONOMER.
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0RD40_CLAMS

Accession

Primary (citable) accession number: B0RD40

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	May 1, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)