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B0RD40 (B0RD40_CLAMS) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length385 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 RuleBase RU004247 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site451Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2731Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1431Substrate By similarity HAMAP-Rule MF_01201
Binding site3211Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue451N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
B0RD40 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: 989F4D16F3258B92

FASTA38539,664
        10         20         30         40         50         60 
MTDEATVQVP AALRREARID LGAISTNVRT LRAAAGAPLV MAVVKADGYG HGAVASARAA 

        70         80         90        100        110        120 
LAGGADRLGV VDIREALALR AAGIEAPILT WMHAPYADFA TAIEAGIDLG LNSLRQVREA 

       130        140        150        160        170        180 
AEAARRVGRT AEVHLKVDTG LGRNGVTPAE WPGVVAEVAA LVAEGRIHLG GVFSHLANAG 

       190        200        210        220        230        240 
EDEDRAQVRA FHEAVDVVRA AGLEPGIRHL AATAGALRVP EARLDMVRLG IGIYGISPLD 

       250        260        270        280        290        300 
GVTSADLGLV PAMTLVGSVV AVKRVPADTG VSYGYTYRTT SATTLALVSL GFADGVPRLA 

       310        320        330        340        350        360 
SNRAPVAIHG ARFRVSGRIA MDQFVVDVGD GVVDGRPVAV GDDAVLFGDP ATGAPSVEEW 

       370        380 
AEATGTIGYE IVARVAGRVT RRHSA 

« Hide

References

[1]"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation."
Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A.
J. Bacteriol. 190:2150-2160(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM849034 Genomic DNA. Translation: CAQ00639.1.
RefSeqYP_001709291.1. NC_010407.1.

3D structure databases

ProteinModelPortalB0RD40.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING31964.CMS_0520.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ00639; CAQ00639; CMS0520.
GeneID6158590.
KEGGcms:CMS_0520.
PATRIC21458021. VBIClaMic4666_0579.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0787.
KOK01775.
OMAPSECAGV.
OrthoDBEOG6PP9NJ.

Enzyme and pathway databases

BioCycCMIC31964:GJBN-528-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB0RD40_CLAMS
AccessionPrimary (citable) accession number: B0RD40
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: July 9, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)