B0RBN2 (B0RBN2_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Thymidine phosphorylase EMBL CAQ02928.1
EC=2.4.2.4 EMBL CAQ02928.1

Gene names

Name:	deoA EMBL CAQ02928.1
Ordered Locus Names:	CMS2857

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ02928.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	432 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Glycosyltransferase EMBL CAQ02928.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	pyrimidine base metabolic process Inferred from electronic annotation. Source: InterPro pyrimidine nucleoside metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	pyrimidine-nucleoside phosphorylase activity Inferred from electronic annotation. Source: InterPro thymidine phosphorylase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0RBN2 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: 0F599F61D7BAA561	FASTA	432	45,667
	10 20 30 40 50 60 MSAAFDVVDL IRTKRDGGRL STAEIDWLVA AYTDRYVADE QMAALAMAIL LRGMDRTEIR 70 80 90 100 110 120 DLTLAMIASG ETLDFSRLGK PTVDKHSTGG VGDKITLPLM PLVASYGVAV PQLSGRGLGH 130 140 150 160 170 180 TGGTLDKLES IPGWRADLST EEMVRQMRDH GGVICAAGSG LAPADKRLYA LRDTTGTVEA 190 200 210 220 230 240 IPLIASSIMS KKIAEGTGAL VLDVKFGSGA FMTDIDRSRE LARTMVELGT DAGVRTTALL 250 260 270 280 290 300 TDMDVPLGLA IGNANEVRES LEVLAGGGPA DVVELTLALA REMLAAVGIP DADVDVALRD 310 320 330 340 350 360 GRAMDSWRAT VRAQGGDPDA AMPVARETHV VTAERDGVLV QQDALPFGIA AWRLGTGRAR 370 380 390 400 410 420 QGDAVQHAAG VDLHAKPGDA VRRGDPLFTL STDEPERFAR ALESLEGAYR VGDAEEHVAR 430 GPLVRERITA EG

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A. J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ02928.1.
RefSeq	YP_001711490.1. NC_010407.1.
3D structure databases
ProteinModelPortal	B0RBN2.
ModBase	Search...
Protein-protein interaction databases
STRING	B0RBN2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6158380.
GenomeReviews	Gene locus CMS2857 in contig AM849034_GR.
KEGG	cms:CMS_2857.
PATRIC	21462753. VBIClaMic4666_2911.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG288505.
OMA	VARETHV.
ProtClustDB	PRK05820.
Family and domain databases
InterPro	IPR000312. Glycosyl_Trfase_fam3. IPR017459. Glycosyl_Trfase_fam3_N. IPR020072. Glycosyl_Trfase_fam3_subgr_N. IPR013102. PYNP_C. IPR018090. Pyrmidine_PPas_bac/euk. IPR000053. Pyrmidine_PPase. IPR017872. Pyrmidine_PPase_CS. [Graphical view]
Gene3D	G3DSA:3.90.1170.30. G3DSA:3.90.1170.30. 1 hit. G3DSA:1.20.970.10. Glyco_trans_3. 1 hit. G3DSA:3.40.1030.10. Glyco_trans_3. 1 hit.
KO	K00758.
PANTHER	PTHR10515. Pyrmidine_PPase. 1 hit.
Pfam	PF02885. Glycos_trans_3N. 1 hit. PF00591. Glycos_transf_3. 1 hit. PF07831. PYNP_C. 1 hit. [Graphical view]
PIRSF	PIRSF000478. TP_PyNP. 1 hit.
SMART	SM00941. PYNP_C. 1 hit. [Graphical view]
SUPFAM	SSF47648. Glyco_trans_3. 1 hit. SSF52418. Glyco_trans_3. 1 hit. SSF54680. PYNP_C. 1 hit.
TIGRFAMs	TIGR02644. Y_phosphoryl. 1 hit.
PROSITE	PS00647. THYMID_PHOSPHORYLASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0RBN2_CLAMS

Accession

Primary (citable) accession number: B0RBN2

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	December 14, 2011
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)