B0RBL4 (B0RBL4_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Delta-aminolevulinic acid dehydratase EMBL CAQ02910.1

Gene names

Name:	hemB EMBL CAQ02910.1
Ordered Locus Names:	CMS2839

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ02910.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	326 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Ligand	Magnesium PIRSR PIRSR001415-5 Metal-binding PIRSR PIRSR001415-5
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	porphyrin-containing compound biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW porphobilinogen synthase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	197	1	Schiff-base intermediate with substrate By similarity PIRSR PIRSR001415-1
	Active site	249	1	Schiff-base intermediate with substrate By similarity PIRSR PIRSR001415-1
	Metal binding	234	1	Magnesium By similarity PIRSR PIRSR001415-5
	Binding site	207	1	Substrate 1 By similarity PIRSR PIRSR001415-2
	Binding site	218	1	Substrate 1 By similarity PIRSR PIRSR001415-2
	Binding site	275	1	Substrate 2 By similarity PIRSR PIRSR001415-2
	Binding site	314	1	Substrate 2 By similarity PIRSR PIRSR001415-2

Sequences

	Sequence		Length	Mass (Da)
	B0RBL4 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: C3EEB85B22FE1DA7	FASTA	326	35,342
	10 20 30 40 50 60 MTSPYYRPRR LRTTPAMRRL TAETRLHAAD LVLPMFVREG LTEASPITSM PGVSQHSLDS 70 80 90 100 110 120 LRRALVEAAE AGIGGVMLFG VPEVRDAEGS GASDPDGILN VATRVAIEEF GDALVVQTDL 130 140 150 160 170 180 CLDEFTDHGH CGVLDADGVV DNDRSLDRYR AMGLAQAEAG SHLLGLSGMM DGQVGAVREA 190 200 210 220 230 240 LDDAGHHDVA ILAYAAKYAS AFYGPFREAV DSQLQGDRRT YQMDNGNRRE ALREVELDIE 250 260 270 280 290 300 EGADVVMVKP AMSYLDILAD VAATSSVPVW AYQISGEYAM IEAAAQNGWI DRERAIDESV 310 320 LGIKRAGADA ILTYWAVELA ERLARR

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A. J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ02910.1.
RefSeq	YP_001711472.1. NC_010407.1.
3D structure databases
ProteinModelPortal	B0RBL4.
ModBase	Search...
Protein-protein interaction databases
STRING	B0RBL4.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6158746.
GenomeReviews	Gene locus CMS2839 in contig AM849034_GR.
KEGG	cms:CMS_2839.
PATRIC	21462715. VBIClaMic4666_2892.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG285270.
OMA	FTSHGHD.
ProtClustDB	PRK09283.
Family and domain databases
InterPro	IPR013785. Aldolase_TIM. IPR001731. Porphobilinogen_synth. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01698.
PANTHER	PTHR11458. AlaD_dehydratase. 1 hit.
Pfam	PF00490. ALAD. 1 hit. [Graphical view]
PIRSF	PIRSF001415. Porphbilin_synth. 1 hit.
PRINTS	PR00144. DALDHYDRTASE.
SMART	SM01004. ALAD. 1 hit. [Graphical view]
PROSITE	PS00169. D_ALA_DEHYDRATASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0RBL4_CLAMS

Accession

Primary (citable) accession number: B0RBL4

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	January 25, 2012
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)