B0RB70 (B0RB70_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S13 HAMAP MF_01315

Gene names

Name:	rpsM HAMAP MF_01315
Ordered Locus Names:	CMS0314

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ00435.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	124 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites By similarity. HAMAP MF_01315
Subunit structure	Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome By similarity. HAMAP MF_01315
Sequence similarities	Belongs to the ribosomal protein S13P family. HAMAP MF_01315

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01315 tRNA-binding HAMAP MF_01315
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01315 EMBL CAQ00435.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0RB70 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: 1C0AA7C4B74883F0	FASTA	124	14,027
	10 20 30 40 50 60 MARLAGVDLP RDKRVEIALT YIYGVGRTSS VKTLEDTGID KNIRVKDLSD DQLIALRDYI 70 80 90 100 110 120 EGNFKVEGDL RREVAADIRR KVEIGSYEGI RHRRGLPVHG QRTKTNARTR KGPKRTVAGK KKAR

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A. J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ00435.1.
RefSeq	YP_001709096.1. NC_010407.1.
3D structure databases
ProteinModelPortal	B0RB70.
SMR	B0RB70. Positions 2-123.
ModBase	Search...
Protein-protein interaction databases
STRING	B0RB70.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6156285.
GenomeReviews	Gene locus CMS0314 in contig AM849034_GR.
KEGG	cms:CMS_0314.
PATRIC	21457602. VBIClaMic4666_0374.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG737405.
OMA	YRGRRHR.
ProtClustDB	PRK05179.
Family and domain databases
HAMAP	MF_01315_B. Ribosomal_S13_B. [Tree]
InterPro	IPR001892. Ribosomal_S13. IPR010979. Ribosomal_S13-like_H2TH. IPR019980. Ribosomal_S13_bac-type. IPR018269. Ribosomal_S13_CS. [Graphical view]
KO	K02952.
PANTHER	PTHR10871. PTHR10871. 1 hit.
Pfam	PF00416. Ribosomal_S13. 1 hit. [Graphical view]
PIRSF	PIRSF002134. Ribosomal_S13. 1 hit.
SUPFAM	SSF46946. Ribosomal_H2TH. 1 hit.
TIGRFAMs	TIGR03631. Bact_S13. 1 hit.
PROSITE	PS00646. RIBOSOMAL_S13_1. 1 hit. PS50159. RIBOSOMAL_S13_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0RB70_CLAMS

Accession

Primary (citable) accession number: B0RB70

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	January 25, 2012
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)