B0RB51 (B0RB51_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L5 HAMAP MF_01333

Gene names

Name:	rplE HAMAP MF_01333
Ordered Locus Names:	CMS0295

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ00416.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	198 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs By similarity. HAMAP MF_01333
Subunit structure	Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome By similarity. HAMAP MF_01333
Sequence similarities	Belongs to the ribosomal protein L5P family. HAMAP MF_01333

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01333 tRNA-binding HAMAP MF_01333
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01333 EMBL CAQ00416.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0RB51 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: B86A36FF5E976942	FASTA	198	21,858
	10 20 30 40 50 60 MTDTATAGTA EGTTLPRLKQ KYRTEIVSQL TADLGFTNVH QVPGLTKIVV NMGVGDAARD 70 80 90 100 110 120 GKIIDGAVAD LTKITGQKPQ VTKARKSIAQ FKLREGQAIG THVTLRGDRM WEFLDRLLSL 130 140 150 160 170 180 ALPRIRDFRG LSPKQFDGNG NYTFGLNEQS MFHEIDQDRI DRVRGMDITV VTTARTDDEG 190 RALLKALGFP FQTPENTP

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A. J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ00416.1.
RefSeq	YP_001709077.1. NC_010407.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B0RB51.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6156274.
GenomeReviews	Gene locus CMS0295 in contig AM849034_GR.
KEGG	cms:CMS_0295.
PATRIC	21457562. VBIClaMic4666_0354.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG592167.
OMA	RQGMPIG.
ProtClustDB	PRK00010.
Family and domain databases
HAMAP	MF_01333_B. Ribosomal_L5_B. [Tree]
InterPro	IPR002132. Ribosomal_L5. IPR020930. Ribosomal_L5_bac-type. IPR022803. Ribosomal_L5_domain. [Graphical view]
Gene3D	G3DSA:3.30.1440.10. Ribosomal_L5. 1 hit.
KO	K02931.
PANTHER	PTHR11994. Ribosomal_L5. 1 hit.
Pfam	PF00281. Ribosomal_L5. 1 hit. PF00673. Ribosomal_L5_C. 1 hit. [Graphical view]
PIRSF	PIRSF002161. Ribosomal_L5. 1 hit.
SUPFAM	SSF55282. Ribosomal_L5. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B0RB51_CLAMS

Accession

Primary (citable) accession number: B0RB51

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	January 25, 2012
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)