B0RB48 (B0RB48_CLAMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S17 HAMAP MF_01345

Gene names

Name:	rpsQ HAMAP MF_01345
Ordered Locus Names:	CMS0292

Organism

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) [Complete proteome] [HAMAP] EMBL CAQ00413.1

Taxonomic identifier

31964 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	100 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA By similarity. HAMAP MF_01345
Subunit structure	Part of the 30S ribosomal subunit By similarity. HAMAP MF_01345
Sequence similarities	Belongs to the ribosomal protein S17P family. HAMAP MF_01345

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01345
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01345 EMBL CAQ00413.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0RB48 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: F6A822FA25ACB5D1	FASTA	100	11,313
	10 20 30 40 50 60 MIMANAEEKN TADTATADRG YRKSRRGYVT SDKMDKTIVV EVEDRVKHPL YGKVIRRTSK 70 80 90 100 VKAHDEANTA GIGDLVLINE TRPLSASKRW RLVEILEKAK

References

[1]

"Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation." Bentley S.D., Corton C., Brown S.E., Barron A., Clark L., Doggett J., Harris B., Ormond D., Quail M.A., May G., Francis D., Knudson D., Parkhill J., Ishimaru C.A. J. Bacteriol. 190:2150-2160(2008) [PubMed: 18192393] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM849034 Genomic DNA. Translation: CAQ00413.1.
RefSeq	YP_001709074.1. NC_010407.1.
3D structure databases
ProteinModelPortal	B0RB48.
SMR	B0RB48. Positions 22-99.
ModBase	Search...
Protein-protein interaction databases
STRING	B0RB48.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6158956.
GenomeReviews	Gene locus CMS0292 in contig AM849034_GR.
KEGG	cms:CMS_0292.
PATRIC	21457556. VBIClaMic4666_0351.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG750455.
OMA	TIRECRP.
ProtClustDB	PRK05610.
Family and domain databases
HAMAP	MF_01345_B. Ribosomal_S17_B. [Tree]
InterPro	IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR000266. Ribosomal_S17. IPR019984. Ribosomal_S17_bac-type. IPR019979. Ribosomal_S17_CS. [Graphical view]
Gene3D	G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KO	K02961.
PANTHER	PTHR10744. Ribosomal_S17. 1 hit.
Pfam	PF00366. Ribosomal_S17. 1 hit. [Graphical view]
PRINTS	PR00973. RIBOSOMALS17.
ProDom	PD001295. Ribosomal_S17. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR03635. S17_bact. 1 hit.
PROSITE	PS00056. RIBOSOMAL_S17. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0RB48_CLAMS

Accession

Primary (citable) accession number: B0RB48

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	January 25, 2012
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)