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Protein

Pyruvoyl-dependent arginine decarboxylase

Gene

pdaD

Organism
Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-arginine = agmatine + CO2.

Cofactori

pyruvateBy similarityNote: Binds 1 pyruvoyl group covalently per subunit.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDecarboxylase, Lyase
LigandPyruvate

Names & Taxonomyi

Protein namesi
Recommended name:
Pyruvoyl-dependent arginine decarboxylase (EC:4.1.1.19)
Short name:
PvlArgDC
Cleaved into the following 2 chains:
Gene namesi
Name:pdaD
Ordered Locus Names:OE_3803R
OrganismiHalobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
Taxonomic identifieri478009 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHalobacterium
Proteomesi
  • UP000001321 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10001454681 – 38Pyruvoyl-dependent arginine decarboxylase subunit betaBy similarityAdd BLAST38
ChainiPRO_100014546939 – 160Pyruvoyl-dependent arginine decarboxylase subunit alphaBy similarityAdd BLAST122

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei39Pyruvic acid (Ser)By similarity1

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei38 – 39Cleavage (non-hydrolytic)By similarity2

Proteomic databases

PRIDEiB0R6U7.

Structurei

3D structure databases

ProteinModelPortaliB0R6U7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PdaD family.Curated

Phylogenomic databases

HOGENOMiHOG000092310.
KOiK02626.
OMAiTIRVVWG.
OrthoDBiPOG093Z0EQM.

Family and domain databases

Gene3Di3.50.20.10. 1 hit.
InterProiView protein in InterPro
IPR016104. Pyr-dep_his/arg-deCO2ase.
IPR016105. Pyr-dep_his/arg-deCO2ase_sand.
IPR002724. Pyruvoyl-dep_arg_deCO2ase.
PANTHERiPTHR40438:SF2. PTHR40438:SF2. 1 hit.
PfamiView protein in Pfam
PF01862. PvlArgDC. 1 hit.
PIRSFiPIRSF005216. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010449. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
SUPFAMiSSF56271. SSF56271. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

B0R6U7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRIRIAWGS GVAPTEMAAY DAALADANVH NYNLIRVSSV IPADATVSPV
60 70 80 90 100
DTAPDLGPAG NTLTVVEARG QTAGPGQASA GLAWAPRDGA PGLFYEAADE
110 120 130 140 150
TTPDDVADRV TTGITAGMDV RDWDGVEPSV RTETVTADAG EHAAAVVIAA
160
YGDSDPVFDQ
Length:160
Mass (Da):16,364
Last modified:April 8, 2008 - v1
Checksum:iB77749F3A1E97BCD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM774415 Genomic DNA. Translation: CAP14466.1.
RefSeqiWP_010903471.1. NC_010364.1.

Genome annotation databases

EnsemblBacteriaiCAP14466; CAP14466; OE_3803R.
GeneIDi5953199.
KEGGihsl:OE_3803R.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiPDAD_HALS3
AccessioniPrimary (citable) accession number: B0R6U7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: April 8, 2008
Last modified: March 15, 2017
This is version 48 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families