B0PHF9 (B0PHF9_9FIRM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional regulator, LacI family EMBL EDS08927.1

Gene names

ORF Names:

ANACOL_04252 EMBL EDS08927.1

Organism

Anaerotruncus colihominis DSM 17241 EMBL EDS08927.1

Taxonomic identifier

445972 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Ruminococcaceae › Anaerotruncus › Anaerotruncus colihominis

Protein attributes

Sequence length	336 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities	Contains 1 HTH lacI-type DNA-binding domain. SAAS SAAS000843
Caution	The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL EDS08927.1

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS000843 RuleBase RU000708
Ligand	DNA-binding SAAS SAAS000843 RuleBase RU000708
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0PHF9 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: 1CA6B98DD1B26758	FASTA	336	36,069
	10 20 30 40 50 60 MAATLKDVAE HAGVSIATVS RVLNEPEKVA EQSRIKVLNA IDELGYSSNL LAKSLRKDGL 70 80 90 100 110 120 NAVFVLLPSL SDPFFAQINQ GISDVLASYG YLMLTVATEG MHNLEEEYLL KAKSMGLAGV 130 140 150 160 170 180 LIYTAHRRMP SSWEAFCANF PILFLSNTDP LGVPNAEQLP IPWGELGSQI ASYLLKQGRR 190 200 210 220 230 240 RFLYLANDIS GFSPDFLAGL QSTVQQAGGL CGHCRADASL DDAARELNRY CRQSGETPDA 250 260 270 280 290 300 VITQNCFQGA GVLLSLAGQE LHVPQDVAVL CLENSRLAQL PTPQLSVWGP SGYQVGVVGS 310 320 330 RRLLDLIRAG TGETLPPLGD EIGLTLIARG STDVAE

References

[1]	"Draft genome sequence of Anaerotruncus colihominis(DSM 17241)." Sudarsanam P., Ley R., Guruge J., Turnbaugh P.J., Mahowald M., Liep D., Gordon J. Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: DSM 17241 EMBL EDS08927.1.
[2]	Fulton L., Clifton S., Fulton B., Xu J., Minx P., Pepin K.H., Johnson M., Thiruvilangam P., Bhonagiri V., Nash W.E., Mardis E.R., Wilson R.K. Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: DSM 17241 EMBL EDS08927.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	ABGD02000034 Genomic DNA. Translation: EDS08927.1.
3D structure databases
ProteinModelPortal	B0PHF9.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EDS08927; EDS08927; ANACOL_04252.
PATRIC	24517450. VBIAnaCol135235_3686.
Family and domain databases
Gene3D	1.10.260.40. 1 hit.
InterPro	IPR010982. Lambda_DNA-bd_dom. IPR000843. Tscrpt_reg_HTH_LacI. [Graphical view]
Pfam	PF00356. LacI. 1 hit. [Graphical view]
PRINTS	PR00036. HTHLACI.
SMART	SM00354. HTH_LACI. 1 hit. [Graphical view]
SUPFAM	SSF47413. Lambda_like_DNA. 1 hit.
PROSITE	PS00356. HTH_LACI_1. 1 hit. PS50932. HTH_LACI_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0PHF9_9FIRM

Accession

Primary (citable) accession number: B0PHF9

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	April 3, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)