B0KUB2 (B0KUB2_PSEPG) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Beta-agarase EMBL ABZ00178.1
EC=3.2.1.81 EMBL ABZ00178.1

Gene names

Ordered Locus Names:

PputGB1_4289

Organism

Pseudomonas putida (strain GB-1) [Complete proteome] [HAMAP] EMBL ABZ00178.1

Taxonomic identifier

76869 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length	744 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABZ00178.1
Molecular function	Glycosidase EMBL ABZ00178.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	beta-galactosidase complex Inferred from electronic annotation. Source: InterPro
Molecular function	beta-agarase activity Inferred from electronic annotation. Source: EC beta-galactosidase activity Inferred from electronic annotation. Source: InterPro cation binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 21	21	Potential EMBL ABZ00178.1
	Chain	22 – 744	723	Potential EMBL ABZ00178.1		PRO_5000305820

Sequences

	Sequence		Length	Mass (Da)
	B0KUB2 [UniParc]. Last modified March 18, 2008. Version 1. Checksum: 729B156B93323276	FASTA	744	82,016
	10 20 30 40 50 60 MVRRTLPAVF ALLFSSPLLA GQQTLFSFVR PASVVNVVTE DAGMPQYNAE QTAEGEVLRR 70 80 90 100 110 120 VVFNPAQRPT LRLSPQGGAW DWSAGQFLTL RLQSAMDWAL TVDVTVQGSD GRTLTSRIDL 130 140 150 160 170 180 PAGPAQTVMV PLTASSPLNQ GMRAGPPMPW NYGGQRLLLT SSAGAVDLKQ VASVSLSIPN 190 200 210 220 230 240 PKVAQNLLIE RVGIQDDDQA YKAAYHELID TYGQSTRGNW PEKVTNDEQL KAADTREQQQ 250 260 270 280 290 300 LKGWLTERGK QQLDPYGGLL AGPAFAAKGF FRTEKRDGRW YLVTPEGHPF YSLGVNAVAA 310 320 330 340 350 360 DGGRTYVAGR EGMFKALPAE GNALAAFYGE GNNDDGNASS QGRNFKQGRW FDFYAANLQR 370 380 390 400 410 420 TYGKPCPPAV EGQPANCPPL ALDAARWQTH ALDRLQAWGF NTIGNWSEPA LGQARRLPYT 430 440 450 460 470 480 VPLSIVGDYA SISTGMDWWG SMPDPFDPRF AMATERAVAI AARDHRDDPW LIGYFADNEL 490 500 510 520 530 540 AWAAPGSDPK ARYGLAYGTL RLTTDVPAKR AFLKQLRDKY RNQEGLSKAW GIELAAWELM 550 560 570 580 590 600 EDPGFEAPLP NPEHPEIERD YQHFQQVFAE TYFKTIADSL KWHAPNHLLL GGRYAISTPE 610 620 630 640 650 660 AVKACAEFCD VLSFNFYTLK PQDGYDFARL AELDKPVLVS EFQFGSRDRG PFWPGPLELA 670 680 690 700 710 720 REEDRGPAYG NFLKAALAQP MIVGAHWFQY LDQPASGRLL DGENGHLGLV AITDVPYPGF 730 740 VDAVRKSNLQ AMGQLRALLE KPAP

References

[1]

"Complete sequence of Pseudomonas putida GB-1." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Bruce D., Goodwin L., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., McCarthy J.K., Richardson P. Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: GB-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000926 Genomic DNA. Translation: ABZ00178.1.
RefSeq	YP_001670513.1. NC_010322.1.
3D structure databases
ProteinModelPortal	B0KUB2.
ModBase	Search...
Protein-protein interaction databases
STRING	B0KUB2.
Protein family/group databases
CAZy	GH50. Glycoside Hydrolase Family 50.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5872096.
GenomeReviews	Gene locus PputGB1_4289 in contig CP000926_GR.
KEGG	ppg:PputGB1_4289.
PATRIC	19935653. VBIPsePut76638_4292.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG336281.
OMA	LDGENGH.
ProtClustDB	CLSK866307.
Enzyme and pathway databases
BioCyc	PPUT76869:PPUTGB1_4289-MONOMER.
Family and domain databases
InterPro	IPR013529. Glyco_hydro_42_N. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Gene3D	G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
Pfam	PF02449. Glyco_hydro_42. 1 hit. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B0KUB2_PSEPG

Accession

Primary (citable) accession number: B0KUB2

Entry history

Integrated into UniProtKB/TrEMBL:	March 18, 2008
Last sequence update:	March 18, 2008
Last modified:	December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)