Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

B0KSK9 (B0KSK9_PSEPG) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:PputGB1_2635 EMBL ABY98534.1
OrganismPseudomonas putida (strain GB-1) [Complete proteome] [HAMAP] EMBL ABY98534.1
Taxonomic identifier76869 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length833 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABY98534.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B0KSK9 [UniParc].

Last modified March 18, 2008. Version 1.
Checksum: 240CD65A03CEAC54

FASTA83392,845
        10         20         30         40         50         60 
MAKPLQEYAR KRDFSATPEP DGRRSRGKQA HALLFCIQKH DASHLHYDFR LELDGTLKSW 

        70         80         90        100        110        120 
AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA GDVIVWDRGI WEPEGDAREA 

       130        140        150        160        170        180 
YAKGKLRFRL QGEKLSGVWN LFRTHLAGKK EQWMLVKSHD GQARSEADYS IVEAQPDSVL 

       190        200        210        220        230        240 
SDRTLLPRKA AAKKATTPRT NRQRTGKGQH APLPAQLQPQ LATLVDSPPS GDWRYEVKFD 

       250        260        270        280        290        300 
GYRIMARIDG EDIRLFTRNG HDWSSKMPRQ VAALRALGVG SAWLDGEMVV VDENGAADFQ 

       310        320        330        340        350        360 
ALQNAFDTEH DEGIAYYLFD LPFLGGRDLR QVPLQGRRDT LRQLLGHDES DVLKFSADFD 

       370        380        390        400        410        420 
QPVESLLDSA CRLQLEGLIG KRVDSPYSGR RSSDWVKLKC KQRQEFVIVG YTDPKGSRSG 

       430        440        450        460        470        480 
FGALLLALHD NDSGELRYAG KVGTGFSDTT LATLLARLTS LETAKPAVAR PPTGAEARGV 

       490        500        510        520        530        540 
HWLQPKLLAE VAYAQMTRDG IVRHSVFHGL RDDKAATAID LERAMPAKTV PKRSKQAKTS 

       550        560        570        580        590        600 
ETPDELHLTH PDRVIDATLG ATKREVAEYY ADISQWILPQ LKHRPVALVR APDGLAGELF 

       610        620        630        640        650        660 
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NMLELHTWNA TDKDFDKPDR 

       670        680        690        700        710        720 
FVLDLDPDPA LPWKAMLEAT QLTLTLLDEL GLKVFLKTSG GKGIHVVVPL TRRAGWDEVK 

       730        740        750        760        770        780 
GFSHAIVNYL ATLFPDRLSA VSGPKNRVGR IFIDYLRNSK GATTACAYSL RAREGLPVSV 

       790        800        810        820        830 
PIWREELVQL KAANTWNIAN VRERLAAVED PWADLGKVRQ SITARMRKQL GLS 

« Hide

References

[1]"Complete sequence of Pseudomonas putida GB-1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Bruce D., Goodwin L., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Kim E., McCarthy J.K., Richardson P.
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: GB-1 EMBL ABY98534.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000926 Genomic DNA. Translation: ABY98534.1.
RefSeqYP_001668870.1. NC_010322.1.

3D structure databases

ProteinModelPortalB0KSK9.
SMRB0KSK9. Positions 545-830.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING76869.PputGB1_2635.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABY98534; ABY98534; PputGB1_2635.
GeneID5870424.
KEGGppg:PputGB1_2635.
PATRIC19932315. VBIPsePut76638_2645.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAHPLDYAD.
OrthoDBEOG661H49.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycPPUT76869:GIXB-2695-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB0KSK9_PSEPG
AccessionPrimary (citable) accession number: B0KSK9
Entry history
Integrated into UniProtKB/TrEMBL: March 18, 2008
Last sequence update: March 18, 2008
Last modified: April 16, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)