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B0KSK9

- B0KSK9_PSEPG

UniProt

B0KSK9 - B0KSK9_PSEPG

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Protein
Submitted name:

DNA ligase D

Gene

PputGB1_2635

Organism
Pseudomonas putida (strain GB-1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT76869:GIXB-2695-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:PputGB1_2635Imported
OrganismiPseudomonas putida (strain GB-1)Imported
Taxonomic identifieri76869 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002157: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi76869.PputGB1_2635.

Structurei

3D structure databases

ProteinModelPortaliB0KSK9.
SMRiB0KSK9. Positions 545-830.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B0KSK9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKPLQEYAR KRDFSATPEP DGRRSRGKQA HALLFCIQKH DASHLHYDFR
60 70 80 90 100
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA
110 120 130 140 150
GDVIVWDRGI WEPEGDAREA YAKGKLRFRL QGEKLSGVWN LFRTHLAGKK
160 170 180 190 200
EQWMLVKSHD GQARSEADYS IVEAQPDSVL SDRTLLPRKA AAKKATTPRT
210 220 230 240 250
NRQRTGKGQH APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRIMARIDG
260 270 280 290 300
EDIRLFTRNG HDWSSKMPRQ VAALRALGVG SAWLDGEMVV VDENGAADFQ
310 320 330 340 350
ALQNAFDTEH DEGIAYYLFD LPFLGGRDLR QVPLQGRRDT LRQLLGHDES
360 370 380 390 400
DVLKFSADFD QPVESLLDSA CRLQLEGLIG KRVDSPYSGR RSSDWVKLKC
410 420 430 440 450
KQRQEFVIVG YTDPKGSRSG FGALLLALHD NDSGELRYAG KVGTGFSDTT
460 470 480 490 500
LATLLARLTS LETAKPAVAR PPTGAEARGV HWLQPKLLAE VAYAQMTRDG
510 520 530 540 550
IVRHSVFHGL RDDKAATAID LERAMPAKTV PKRSKQAKTS ETPDELHLTH
560 570 580 590 600
PDRVIDATLG ATKREVAEYY ADISQWILPQ LKHRPVALVR APDGLAGELF
610 620 630 640 650
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NMLELHTWNA
660 670 680 690 700
TDKDFDKPDR FVLDLDPDPA LPWKAMLEAT QLTLTLLDEL GLKVFLKTSG
710 720 730 740 750
GKGIHVVVPL TRRAGWDEVK GFSHAIVNYL ATLFPDRLSA VSGPKNRVGR
760 770 780 790 800
IFIDYLRNSK GATTACAYSL RAREGLPVSV PIWREELVQL KAANTWNIAN
810 820 830
VRERLAAVED PWADLGKVRQ SITARMRKQL GLS
Length:833
Mass (Da):92,845
Last modified:March 18, 2008 - v1
Checksum:i240CD65A03CEAC54
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000926 Genomic DNA. Translation: ABY98534.1.
RefSeqiYP_001668870.1. NC_010322.1.

Genome annotation databases

EnsemblBacteriaiABY98534; ABY98534; PputGB1_2635.
GeneIDi5870424.
KEGGippg:PputGB1_2635.
PATRICi19932315. VBIPsePut76638_2645.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000926 Genomic DNA. Translation: ABY98534.1 .
RefSeqi YP_001668870.1. NC_010322.1.

3D structure databases

ProteinModelPortali B0KSK9.
SMRi B0KSK9. Positions 545-830.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 76869.PputGB1_2635.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABY98534 ; ABY98534 ; PputGB1_2635 .
GeneIDi 5870424.
KEGGi ppg:PputGB1_2635.
PATRICi 19932315. VBIPsePut76638_2645.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci PPUT76869:GIXB-2695-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GB-1Imported.

Entry informationi

Entry nameiB0KSK9_PSEPG
AccessioniPrimary (citable) accession number: B0KSK9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 18, 2008
Last sequence update: March 18, 2008
Last modified: October 29, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3