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Protein
Submitted name:

DNA ligase D

Gene

PputGB1_2635

Organism
Pseudomonas putida (strain GB-1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT76869:GIXB-2695-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:PputGB1_2635Imported
OrganismiPseudomonas putida (strain GB-1)Imported
Taxonomic identifieri76869 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002157 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi76869.PputGB1_2635.

Structurei

3D structure databases

SMRiB0KSK9. Positions 545-830.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B0KSK9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKPLQEYAR KRDFSATPEP DGRRSRGKQA HALLFCIQKH DASHLHYDFR
60 70 80 90 100
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA
110 120 130 140 150
GDVIVWDRGI WEPEGDAREA YAKGKLRFRL QGEKLSGVWN LFRTHLAGKK
160 170 180 190 200
EQWMLVKSHD GQARSEADYS IVEAQPDSVL SDRTLLPRKA AAKKATTPRT
210 220 230 240 250
NRQRTGKGQH APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRIMARIDG
260 270 280 290 300
EDIRLFTRNG HDWSSKMPRQ VAALRALGVG SAWLDGEMVV VDENGAADFQ
310 320 330 340 350
ALQNAFDTEH DEGIAYYLFD LPFLGGRDLR QVPLQGRRDT LRQLLGHDES
360 370 380 390 400
DVLKFSADFD QPVESLLDSA CRLQLEGLIG KRVDSPYSGR RSSDWVKLKC
410 420 430 440 450
KQRQEFVIVG YTDPKGSRSG FGALLLALHD NDSGELRYAG KVGTGFSDTT
460 470 480 490 500
LATLLARLTS LETAKPAVAR PPTGAEARGV HWLQPKLLAE VAYAQMTRDG
510 520 530 540 550
IVRHSVFHGL RDDKAATAID LERAMPAKTV PKRSKQAKTS ETPDELHLTH
560 570 580 590 600
PDRVIDATLG ATKREVAEYY ADISQWILPQ LKHRPVALVR APDGLAGELF
610 620 630 640 650
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NMLELHTWNA
660 670 680 690 700
TDKDFDKPDR FVLDLDPDPA LPWKAMLEAT QLTLTLLDEL GLKVFLKTSG
710 720 730 740 750
GKGIHVVVPL TRRAGWDEVK GFSHAIVNYL ATLFPDRLSA VSGPKNRVGR
760 770 780 790 800
IFIDYLRNSK GATTACAYSL RAREGLPVSV PIWREELVQL KAANTWNIAN
810 820 830
VRERLAAVED PWADLGKVRQ SITARMRKQL GLS
Length:833
Mass (Da):92,845
Last modified:March 18, 2008 - v1
Checksum:i240CD65A03CEAC54
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000926 Genomic DNA. Translation: ABY98534.1.
RefSeqiYP_001668870.1. NC_010322.1.

Genome annotation databases

EnsemblBacteriaiABY98534; ABY98534; PputGB1_2635.
KEGGippg:PputGB1_2635.
PATRICi19932315. VBIPsePut76638_2645.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000926 Genomic DNA. Translation: ABY98534.1.
RefSeqiYP_001668870.1. NC_010322.1.

3D structure databases

SMRiB0KSK9. Positions 545-830.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi76869.PputGB1_2635.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABY98534; ABY98534; PputGB1_2635.
KEGGippg:PputGB1_2635.
PATRICi19932315. VBIPsePut76638_2645.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciPPUT76869:GIXB-2695-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GB-1Imported.

Entry informationi

Entry nameiB0KSK9_PSEPG
AccessioniPrimary (citable) accession number: B0KSK9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 18, 2008
Last sequence update: March 18, 2008
Last modified: April 1, 2015
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.