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B0KSK9

- B0KSK9_PSEPG

UniProt

B0KSK9 - B0KSK9_PSEPG

Protein
Submitted name:

DNA ligase D

Gene

PputGB1_2635

Organism
Pseudomonas putida (strain GB-1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (18 Mar 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPPUT76869:GIXB-2695-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:PputGB1_2635Imported
    OrganismiPseudomonas putida (strain GB-1)Imported
    Taxonomic identifieri76869 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000002157: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi76869.PputGB1_2635.

    Structurei

    3D structure databases

    ProteinModelPortaliB0KSK9.
    SMRiB0KSK9. Positions 545-830.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B0KSK9-1 [UniParc]FASTAAdd to Basket

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    MAKPLQEYAR KRDFSATPEP DGRRSRGKQA HALLFCIQKH DASHLHYDFR    50
    LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA 100
    GDVIVWDRGI WEPEGDAREA YAKGKLRFRL QGEKLSGVWN LFRTHLAGKK 150
    EQWMLVKSHD GQARSEADYS IVEAQPDSVL SDRTLLPRKA AAKKATTPRT 200
    NRQRTGKGQH APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRIMARIDG 250
    EDIRLFTRNG HDWSSKMPRQ VAALRALGVG SAWLDGEMVV VDENGAADFQ 300
    ALQNAFDTEH DEGIAYYLFD LPFLGGRDLR QVPLQGRRDT LRQLLGHDES 350
    DVLKFSADFD QPVESLLDSA CRLQLEGLIG KRVDSPYSGR RSSDWVKLKC 400
    KQRQEFVIVG YTDPKGSRSG FGALLLALHD NDSGELRYAG KVGTGFSDTT 450
    LATLLARLTS LETAKPAVAR PPTGAEARGV HWLQPKLLAE VAYAQMTRDG 500
    IVRHSVFHGL RDDKAATAID LERAMPAKTV PKRSKQAKTS ETPDELHLTH 550
    PDRVIDATLG ATKREVAEYY ADISQWILPQ LKHRPVALVR APDGLAGELF 600
    FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NMLELHTWNA 650
    TDKDFDKPDR FVLDLDPDPA LPWKAMLEAT QLTLTLLDEL GLKVFLKTSG 700
    GKGIHVVVPL TRRAGWDEVK GFSHAIVNYL ATLFPDRLSA VSGPKNRVGR 750
    IFIDYLRNSK GATTACAYSL RAREGLPVSV PIWREELVQL KAANTWNIAN 800
    VRERLAAVED PWADLGKVRQ SITARMRKQL GLS 833
    Length:833
    Mass (Da):92,845
    Last modified:March 18, 2008 - v1
    Checksum:i240CD65A03CEAC54
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000926 Genomic DNA. Translation: ABY98534.1.
    RefSeqiWP_012272274.1. NC_010322.1.
    YP_001668870.1. NC_010322.1.

    Genome annotation databases

    EnsemblBacteriaiABY98534; ABY98534; PputGB1_2635.
    GeneIDi5870424.
    KEGGippg:PputGB1_2635.
    PATRICi19932315. VBIPsePut76638_2645.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000926 Genomic DNA. Translation: ABY98534.1 .
    RefSeqi WP_012272274.1. NC_010322.1.
    YP_001668870.1. NC_010322.1.

    3D structure databases

    ProteinModelPortali B0KSK9.
    SMRi B0KSK9. Positions 545-830.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 76869.PputGB1_2635.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABY98534 ; ABY98534 ; PputGB1_2635 .
    GeneIDi 5870424.
    KEGGi ppg:PputGB1_2635.
    PATRICi 19932315. VBIPsePut76638_2645.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci PPUT76869:GIXB-2695-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: GB-1Imported.

    Entry informationi

    Entry nameiB0KSK9_PSEPG
    AccessioniPrimary (citable) accession number: B0KSK9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 18, 2008
    Last sequence update: March 18, 2008
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3