B0KSK9 (B0KSK9_PSEPG) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ABY98534.1

Gene names

Ordered Locus Names:

PputGB1_2635

Organism

Pseudomonas putida (strain GB-1) [Complete proteome] [HAMAP] EMBL ABY98534.1

Taxonomic identifier

76869 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas putida group › Pseudomonas putida

Protein attributes

Sequence length	833 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABY98534.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0KSK9 [UniParc]. Last modified March 18, 2008. Version 1. Checksum: 240CD65A03CEAC54	FASTA	833	92,845
	10 20 30 40 50 60 MAKPLQEYAR KRDFSATPEP DGRRSRGKQA HALLFCIQKH DASHLHYDFR LELDGTLKSW 70 80 90 100 110 120 AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA GDVIVWDRGI WEPEGDAREA 130 140 150 160 170 180 YAKGKLRFRL QGEKLSGVWN LFRTHLAGKK EQWMLVKSHD GQARSEADYS IVEAQPDSVL 190 200 210 220 230 240 SDRTLLPRKA AAKKATTPRT NRQRTGKGQH APLPAQLQPQ LATLVDSPPS GDWRYEVKFD 250 260 270 280 290 300 GYRIMARIDG EDIRLFTRNG HDWSSKMPRQ VAALRALGVG SAWLDGEMVV VDENGAADFQ 310 320 330 340 350 360 ALQNAFDTEH DEGIAYYLFD LPFLGGRDLR QVPLQGRRDT LRQLLGHDES DVLKFSADFD 370 380 390 400 410 420 QPVESLLDSA CRLQLEGLIG KRVDSPYSGR RSSDWVKLKC KQRQEFVIVG YTDPKGSRSG 430 440 450 460 470 480 FGALLLALHD NDSGELRYAG KVGTGFSDTT LATLLARLTS LETAKPAVAR PPTGAEARGV 490 500 510 520 530 540 HWLQPKLLAE VAYAQMTRDG IVRHSVFHGL RDDKAATAID LERAMPAKTV PKRSKQAKTS 550 560 570 580 590 600 ETPDELHLTH PDRVIDATLG ATKREVAEYY ADISQWILPQ LKHRPVALVR APDGLAGELF 610 620 630 640 650 660 FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NMLELHTWNA TDKDFDKPDR 670 680 690 700 710 720 FVLDLDPDPA LPWKAMLEAT QLTLTLLDEL GLKVFLKTSG GKGIHVVVPL TRRAGWDEVK 730 740 750 760 770 780 GFSHAIVNYL ATLFPDRLSA VSGPKNRVGR IFIDYLRNSK GATTACAYSL RAREGLPVSV 790 800 810 820 830 PIWREELVQL KAANTWNIAN VRERLAAVED PWADLGKVRQ SITARMRKQL GLS

References

[1]

"Complete sequence of Pseudomonas putida GB-1." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Bruce D., Goodwin L., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., McCarthy J.K., Richardson P. Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: GB-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000926 Genomic DNA. Translation: ABY98534.1.
RefSeq	YP_001668870.1. NC_010322.1.
3D structure databases
ProteinModelPortal	B0KSK9.
SMR	B0KSK9. Positions 545-830.
ModBase	Search...
Protein-protein interaction databases
STRING	76869.PputGB1_2635.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABY98534; ABY98534; PputGB1_2635.
GeneID	5870424.
KEGG	ppg:PputGB1_2635.
PATRIC	19932315. VBIPsePut76638_2645.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	PPUT76869:GIXB-2695-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0KSK9_PSEPG

Accession

Primary (citable) accession number: B0KSK9

Entry history

Integrated into UniProtKB/TrEMBL:	March 18, 2008
Last sequence update:	March 18, 2008
Last modified:	May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)