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B0KSK9

- B0KSK9_PSEPG

UniProt

B0KSK9 - B0KSK9_PSEPG

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Protein
Submitted name:

DNA ligase D

Gene
PputGB1_2635
Organism
Pseudomonas putida (strain GB-1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT76869:GIXB-2695-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:PputGB1_2635Imported
OrganismiPseudomonas putida (strain GB-1)Imported
Taxonomic identifieri76869 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002157: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi76869.PputGB1_2635.

Structurei

3D structure databases

ProteinModelPortaliB0KSK9.
SMRiB0KSK9. Positions 545-830.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B0KSK9-1 [UniParc]FASTAAdd to Basket

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MAKPLQEYAR KRDFSATPEP DGRRSRGKQA HALLFCIQKH DASHLHYDFR    50
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA 100
GDVIVWDRGI WEPEGDAREA YAKGKLRFRL QGEKLSGVWN LFRTHLAGKK 150
EQWMLVKSHD GQARSEADYS IVEAQPDSVL SDRTLLPRKA AAKKATTPRT 200
NRQRTGKGQH APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRIMARIDG 250
EDIRLFTRNG HDWSSKMPRQ VAALRALGVG SAWLDGEMVV VDENGAADFQ 300
ALQNAFDTEH DEGIAYYLFD LPFLGGRDLR QVPLQGRRDT LRQLLGHDES 350
DVLKFSADFD QPVESLLDSA CRLQLEGLIG KRVDSPYSGR RSSDWVKLKC 400
KQRQEFVIVG YTDPKGSRSG FGALLLALHD NDSGELRYAG KVGTGFSDTT 450
LATLLARLTS LETAKPAVAR PPTGAEARGV HWLQPKLLAE VAYAQMTRDG 500
IVRHSVFHGL RDDKAATAID LERAMPAKTV PKRSKQAKTS ETPDELHLTH 550
PDRVIDATLG ATKREVAEYY ADISQWILPQ LKHRPVALVR APDGLAGELF 600
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NMLELHTWNA 650
TDKDFDKPDR FVLDLDPDPA LPWKAMLEAT QLTLTLLDEL GLKVFLKTSG 700
GKGIHVVVPL TRRAGWDEVK GFSHAIVNYL ATLFPDRLSA VSGPKNRVGR 750
IFIDYLRNSK GATTACAYSL RAREGLPVSV PIWREELVQL KAANTWNIAN 800
VRERLAAVED PWADLGKVRQ SITARMRKQL GLS 833
Length:833
Mass (Da):92,845
Last modified:March 18, 2008 - v1
Checksum:i240CD65A03CEAC54
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000926 Genomic DNA. Translation: ABY98534.1.
RefSeqiWP_012272274.1. NC_010322.1.
YP_001668870.1. NC_010322.1.

Genome annotation databases

EnsemblBacteriaiABY98534; ABY98534; PputGB1_2635.
GeneIDi5870424.
KEGGippg:PputGB1_2635.
PATRICi19932315. VBIPsePut76638_2645.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000926 Genomic DNA. Translation: ABY98534.1 .
RefSeqi WP_012272274.1. NC_010322.1.
YP_001668870.1. NC_010322.1.

3D structure databases

ProteinModelPortali B0KSK9.
SMRi B0KSK9. Positions 545-830.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 76869.PputGB1_2635.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABY98534 ; ABY98534 ; PputGB1_2635 .
GeneIDi 5870424.
KEGGi ppg:PputGB1_2635.
PATRICi 19932315. VBIPsePut76638_2645.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci PPUT76869:GIXB-2695-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GB-1Imported.

Entry informationi

Entry nameiB0KSK9_PSEPG
AccessioniPrimary (citable) accession number: B0KSK9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 18, 2008
Last sequence update: March 18, 2008
Last modified: September 3, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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