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B0KI00 (RIMK_PSEPG) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Probable alpha-L-glutamate ligase

EC=6.3.2.-
Gene names
Name:rimK
Ordered Locus Names:PputGB1_0273
OrganismPseudomonas putida (strain GB-1) [Complete proteome] [HAMAP]
Taxonomic identifier76869 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length301 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity.

Sequence similarities

Belongs to the RimK family.

Contains 1 ATP-grasp domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 301301Probable alpha-L-glutamate ligase HAMAP-Rule MF_01552
PRO_1000087749

Regions

Domain104 – 287184ATP-grasp
Nucleotide binding178 – 1792ATP By similarity
Nucleotide binding211 – 2133ATP By similarity

Sites

Metal binding2481Magnesium or manganese 1 By similarity
Metal binding2601Magnesium or manganese 1 By similarity
Metal binding2601Magnesium or manganese 2 By similarity
Metal binding2621Magnesium or manganese 2 By similarity
Binding site1411ATP By similarity
Binding site1871ATP By similarity

Sequences

Sequence LengthMass (Da)Tools
B0KI00 [UniParc].

Last modified March 18, 2008. Version 1.
Checksum: EA1DC324F0FE6B8E

FASTA30132,645
        10         20         30         40         50         60 
MKIAVLSRNP RLYSTRRLVE AGIQRGHEMV VIDTLRAYMN IASHKPQIHY RGKPLEGFDA 

        70         80         90        100        110        120 
VIPRIGASVT FYGCAVLRQF EMMGVYPLNE SVAIARSRDK LRSLQLLSRR GIGLPITGFA 

       130        140        150        160        170        180 
HSPDDIPDLI QMVNGAPLVI KVLEGTQGIG VVLCETTQAA ESVIEAFMGL KQNIMVQEYI 

       190        200        210        220        230        240 
KEAGGADIRC FVVGDKVIAS MKRQAKPGEF RSNLHRGGVA SLIKITPEER ITAIRAAKVM 

       250        260        270        280        290        300 
GLSVAGVDIL RSNHGPLVME VNSSPGLEGI EVTTGKNVAG MIIEHLEKNG GPNQTRTKGK 


G 

« Hide

References

[1]"Complete sequence of Pseudomonas putida GB-1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Bruce D., Goodwin L., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Kim E., McCarthy J.K., Richardson P.
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: GB-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000926 Genomic DNA. Translation: ABY96186.1.
RefSeqYP_001666522.1. NC_010322.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING76869.PputGB1_0273.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABY96186; ABY96186; PputGB1_0273.
GeneID5867970.
KEGGppg:PputGB1_0273.
PATRIC19927481. VBIPsePut76638_0284.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0189.
HOGENOMHOG000293092.
KOK05844.
OMACREPRLY.
OrthoDBEOG6DZDX8.
ProtClustDBCLSK869184.

Enzyme and pathway databases

BioCycPPUT76869:GIXB-282-MONOMER.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
3.40.50.20. 1 hit.
HAMAPMF_01552. RimK.
InterProIPR011761. ATP-grasp.
IPR013651. ATP-grasp_RimK-type.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR016185. PreATP-grasp_dom.
IPR023533. Ribosomal_S6_modifier_RimK.
IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
[Graphical view]
PfamPF08443. RimK. 1 hit.
[Graphical view]
TIGRFAMsTIGR00768. rimK_fam. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRIMK_PSEPG
AccessionPrimary (citable) accession number: B0KI00
Entry history
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: March 18, 2008
Last modified: March 19, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families