Reviewed, UniProtKB/Swiss-Prot B0KGK3 (SDHD_PSEPG)

Names and origin

Protein names

Recommended name:
    Probable D-serine dehydratase
    EC=4.3.1.18
Alternative name(s):
    D-serine deaminase
      Short name=DSD

Gene names

Name:	dsdA
Ordered Locus Names:	PputGB1_3112

Organism

Pseudomonas putida (strain GB-1) [Complete proteome] [HAMAP]

Taxonomic identifier

76869 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length	445 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	D-serine = pyruvate + NH3. HAMAP MF_01030
Cofactor	Pyridoxal phosphate By similarity.
Sequence similarities	Belongs to the serine/threonine dehydratase family. DsdA subfamily.

Ontologies

Keywords
Ligand	Pyridoxal phosphate
Molecular function	Lyase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	D-amino acid metabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	D-serine ammonia-lyase activity Inferred from electronic annotation. Source: EC hydro-lyase activity Inferred from electronic annotation. Source: HAMAP pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 445	445	Probable D-serine dehydratase HAMAP MF_01030		PRO_1000084241
Amino acid modifications
	Modified residue	119	1	N6-(pyridoxal phosphate)lysine By similarity

Sequences

	Sequence		Length	Mass (Da)
	B0KGK3-1 [UniParc]. Last modified March 18, 2008. Version 1. Checksum: D60F76F2C8400C3D	FASTA	445	47,568
	10 20 30 40 50 60 MIHGKTLEAW QQSHPIIADL VALKETSWFN PGIAQASEAL RDVGLTAADV QAASARLQRF 70 80 90 100 110 120 APYLATVFPE TAPAGGIIES HIAPLPLLRQ RLIEEGALRN AGSLWLKADS DLPVSGSIKA 130 140 150 160 170 180 RGGIHEVLKH AEDLALAAGL ITPTDDYTRL ASEQARAFFG QYKIAVGSTG NLGLSIGIMS 190 200 210 220 230 240 AKLGFQVSVH MSSDARQWKK DKLRANGVTV VEHASDYSVA VEQGRQQAAA DPSCYFVDDE 250 260 270 280 290 300 NSPQLFLGYA VAAERLALQF DQAGIQVDAD HPLFVYLPCG VGGGPGGVAF GLKLVFGDAV 310 320 330 340 350 360 HCIFAEPTHS PCMLLGVYTG LHDETSVQDF GIDNITAADG LAVGRPSGFV GKAMQRLIDG 370 380 390 400 410 420 YYTVTDEALY RLMVIAHEQD KVKLEPSALA GVPGMLRVLQ ADEYLARQGF TPTQLQQATH 430 440 LVWGTGGSMV PEDEFNAYLA KGRSV

References

[1]

"Complete sequence of Pseudomonas putida GB-1." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Bruce D., Goodwin L., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., McCarthy J.K., Richardson P. Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000926 Genomic DNA. Translation: ABY99004.1.
RefSeq	YP_001669340.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	5870897.
GenomeReviews	Gene locus PputGB1_3112 in contig CP000926_GR.
KEGG	ppg:PputGB1_3112.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	B0KGK3. DHPLFVY.
Family and domain databases
HAMAP	MF_01030. [Tree]
InterPro	IPR011780. D_Ser_am_lyase. IPR001926. PyrdxlP-dep_enz_bsu. IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS. [Graphical view]
PANTHER	PTHR10314:SF9. D_Ser_am_lyase. 1 hit.
Pfam	PF00291. PALP. 1 hit. [Graphical view]
TIGRFAMs	TIGR02035. D_Ser_am_lyase. 1 hit.
PROSITE	PS00165. DEHYDRATASE_SER_THR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

SDHD_PSEPG

Accession

Primary (citable) accession number: B0KGK3

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 20, 2008
Last sequence update:	March 18, 2008
Last modified:	June 16, 2009
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)