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B0KGK3 (SDHD_PSEPG) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Probable D-serine dehydratase
EC=4.3.1.18
Alternative name(s):
D-serine deaminase
Short name=DSD
Gene names
Name:dsdA
Ordered Locus Names:PputGB1_3112
OrganismPseudomonas putida (strain GB-1) [Complete proteome] [HAMAP]
Taxonomic identifier76869 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length445 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-serine = pyruvate + NH3. HAMAP MF_01030

Cofactor

Pyridoxal phosphate By similarity. HAMAP MF_01030

Sequence similarities

Belongs to the serine/threonine dehydratase family. DsdA subfamily.

Ontologies

Keywords
   LigandPyridoxal phosphate
   Molecular functionLyase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processD-amino acid metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionD-serine ammonia-lyase activity

Inferred from electronic annotation. Source: EC

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 445445Probable D-serine dehydratase HAMAP MF_01030
PRO_1000084241

Amino acid modifications

Modified residue1191N6-(pyridoxal phosphate)lysine By similarity

Sequences

Sequence LengthMass (Da)Tools
B0KGK3 [UniParc].

Last modified March 18, 2008. Version 1.
Checksum: D60F76F2C8400C3D

FASTA44547,568
        10         20         30         40         50         60 
MIHGKTLEAW QQSHPIIADL VALKETSWFN PGIAQASEAL RDVGLTAADV QAASARLQRF 

        70         80         90        100        110        120 
APYLATVFPE TAPAGGIIES HIAPLPLLRQ RLIEEGALRN AGSLWLKADS DLPVSGSIKA 

       130        140        150        160        170        180 
RGGIHEVLKH AEDLALAAGL ITPTDDYTRL ASEQARAFFG QYKIAVGSTG NLGLSIGIMS 

       190        200        210        220        230        240 
AKLGFQVSVH MSSDARQWKK DKLRANGVTV VEHASDYSVA VEQGRQQAAA DPSCYFVDDE 

       250        260        270        280        290        300 
NSPQLFLGYA VAAERLALQF DQAGIQVDAD HPLFVYLPCG VGGGPGGVAF GLKLVFGDAV 

       310        320        330        340        350        360 
HCIFAEPTHS PCMLLGVYTG LHDETSVQDF GIDNITAADG LAVGRPSGFV GKAMQRLIDG 

       370        380        390        400        410        420 
YYTVTDEALY RLMVIAHEQD KVKLEPSALA GVPGMLRVLQ ADEYLARQGF TPTQLQQATH 

       430        440 
LVWGTGGSMV PEDEFNAYLA KGRSV

« Hide

References

[1]"Complete sequence of Pseudomonas putida GB-1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Bruce D., Goodwin L., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Kim E., McCarthy J.K., Richardson P.
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: GB-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000926 Genomic DNA. Translation: ABY99004.1.
RefSeqYP_001669340.1. NC_010322.1.

3D structure databases

ProteinModelPortalB0KGK3.
ModBaseSearch...

Protein-protein interaction databases

STRINGB0KGK3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5870897.
GenomeReviewsGene locus PputGB1_3112 in contig CP000926_GR.
KEGGppg:PputGB1_3112.
PATRIC19933281. VBIPsePut76638_3128.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG288722.
OMARFAPYIA.
ProtClustDBPRK02991.

Enzyme and pathway databases

BioCycPPUT76869:PPUTGB1_3112-MONOMER.

Family and domain databases

HAMAPMF_01030. D-Ser_dehydrat.
[Tree]
InterProIPR011780. D_Ser_am_lyase.
IPR001926. PyrdxlP-dep_enz_bsu.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
[Graphical view]
KOK01753.
PANTHERPTHR10314:SF9. D_Ser_am_lyase. 1 hit.
PfamPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMSSF53686. PyrdxlP-dep_enz_bsu. 1 hit.
TIGRFAMsTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSDHD_PSEPG
AccessionPrimary (citable) accession number: B0KGK3
Entry history
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: March 18, 2008
Last modified: January 25, 2012
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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