B0KGD4 (B0KGD4_PSEPG) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

PputGB1_1652

Organism

Pseudomonas putida (strain GB-1) [Complete proteome] [HAMAP] EMBL ABY97555.1

Taxonomic identifier

76869 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas putida group › Pseudomonas putida

Protein attributes

Sequence length	294 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0KGD4 [UniParc]. Last modified March 18, 2008. Version 1. Checksum: 1F7FE7FD696387E3	FASTA	294	33,876
	10 20 30 40 50 60 MTTPFDPARQ QASTVCLPPG NWATVLDCLC DHFKAIDRAQ WLDRFARGRV LNAEGQAVSA 70 80 90 100 110 120 ELPYKRGMRL HYFREVPNER PIPVQEVVLH VDEHLVVADK PHFLPVTPTG EYVEQTLLRR 130 140 150 160 170 180 LIRRLGNPHL VPLHRIDRHT AGLVLFSANP QSRSAYQRLF PERRIDKRYQ AIAAALPQHA 190 200 210 220 230 240 FPLVHKSRLV HGEPFFRMHE VEGEANSETL AQVLEKNGEL WRYGLSPVTG KTHQLRVHMA 250 260 270 280 290 ALGAGISNDP FYPQLRNEED DYQRPLKLLA HSLRFEDPLS GEERFFESRL QLDW

References

[1]

"Complete sequence of Pseudomonas putida GB-1." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Bruce D., Goodwin L., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., McCarthy J.K., Richardson P. Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: GB-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000926 Genomic DNA. Translation: ABY97555.1.
RefSeq	YP_001667891.1. NC_010322.1.
3D structure databases
ProteinModelPortal	B0KGD4.
ModBase	Search...
Protein-protein interaction databases
STRING	76869.PputGB1_1652.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABY97555; ABY97555; PputGB1_1652.
GeneID	5869431.
KEGG	ppg:PputGB1_1652.
PATRIC	19930313. VBIPsePut76638_1655.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
HOGENOM	HOG000275916.
KO	K06177.
OMA	FFRMHEV.
ProtClustDB	CLSK866972.
Enzyme and pathway databases
BioCyc	PPUT76869:GIXB-1702-MONOMER.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0KGD4_PSEPG

Accession

Primary (citable) accession number: B0KGD4

Entry history

Integrated into UniProtKB/TrEMBL:	March 18, 2008
Last sequence update:	March 18, 2008
Last modified:	May 1, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)