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B0KD43 (B0KD43_THEP3) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length307 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABY94141.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B0KD43 [UniParc].

Last modified March 18, 2008. Version 1.
Checksum: E8FA1DEBD615F3D8

FASTA30735,798
        10         20         30         40         50         60 
MSMIEEKISP MLASSSDPFD SPEWIYEIKW DGSRTIAFLS NKTRLQDRRL VDITHQFPDL 

        70         80         90        100        110        120 
ALLYKQIKAK EAILDGELVV LKNGKPSYKS IMSRKHQQNL VKINLLSKIM PVIFITWDIL 

       130        140        150        160        170        180 
YLNGKSLVEL PLIERKDILR KTVKENEIIK ISDFIFEHGK MLFEETGKKG LEGIVAKKAD 

       190        200        210        220        230        240 
SKYLIGKRSK LWLKSKHFIV INAVIIGYRT DKTALILGLY DEENNLINIG SCESGLSQKE 

       250        260        270        280        290        300 
LKAFYEVAKE IKAPDNYYNF KEKNVQWLKP LLTCKVRFME WSENMKMRAP SFIQFEYNVK 


PEECRFE 

« Hide

References

[1]"Complete sequence of Thermoanaerobacter pseudethanolicus 39E."
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Bruce D., Goodwin L., Saunders E., Brettin T., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Lykidis A., Hemme C., Fields M.W., He Z., Zhou J., Richardson P.
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33223 / 39E.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000924 Genomic DNA. Translation: ABY94141.1.
RefSeqYP_001664477.1. NC_010321.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING340099.Teth39_0475.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABY94141; ABY94141; Teth39_0475.
GeneID5874228.
KEGGtpd:Teth39_0475.
PATRIC23885549. VBIThePse6203_0500.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222509.
KOK01971.
OMAVEVKYGQ.
OrthoDBEOG6BW4VZ.

Enzyme and pathway databases

BioCycTPSE340099:GH4W-495-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB0KD43_THEP3
AccessionPrimary (citable) accession number: B0KD43
Entry history
Integrated into UniProtKB/TrEMBL: March 18, 2008
Last sequence update: March 18, 2008
Last modified: May 14, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)