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B0K6J8 (B0K6J8_THEPX) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alpha amylase, catalytic region EMBL ABY92474.1
Gene names
Ordered Locus Names:Teth514_1180
OrganismThermoanaerobacter sp. (strain X514) [Complete proteome] [HAMAP]
Taxonomic identifier399726 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Thermoanaerobacterales › Thermoanaerobacteriaceae › Thermoanaerobacter

Protein attributes

Sequence length526 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Keywords
   DomainSignal EMBL ABY92474.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential EMBL ABY92474.1
Chain26 – 526501 Potential EMBL ABY92474.1
PRO_5000304517

Sequences

Sequence LengthMass (Da)Tools
B0K6J8 [UniParc].

Last modified March 18, 2008. Version 1.
Checksum: BF713061880AE779

FASTA52660,045
        10         20         30         40         50         60 
MRKNVKLFAV IILVFSLLLT SCGVKDTTSS NVPESDVIYQ VMIDRFYNGD KSNDDPEVSK 

        70         80         90        100        110        120 
GMFDPTHTNW RMYWGGDLKG LTEKIPYIKG MGVTAIWISP VVDNINKPAI YNGEINAPYH 

       130        140        150        160        170        180 
GYWARDFKRV EEHFGTWEDF DNFVKTAHAN GIKVILDFAP NHTSPADENN PDFAENGALY 

       190        200        210        220        230        240 
GDGKLLGTYS NDLNKLFHHN GTITNWNNLK DLQDKNLFDL ADLDQNNPIV DKYLKDSIKL 

       250        260        270        280        290        300 
WFSHGIDGIR LDAAKHMPME WVKSFADTIY GVKKDAILFG EWMLNSPTDP LYGYNIQFAN 

       310        320        330        340        350        360 
MSGFSVLDFM LNNAIKDVFE KGYGFDRLND TIEETNKDYD NPYKLVTFVD NHDMPRFLSV 

       370        380        390        400        410        420 
NDDKDKLHEA IAFIMTSRGI PAIYYGTEQY LHDDTNGGYD PYNRPMMEKF DENTKAYVLI 

       430        440        450        460        470        480 
RELSNLRKAT PALQYGKTVA KYVSDDVYIY ERQYGKDIVV VAINKGEETT IKNIETSLRK 

       490        500        510        520 
GKYSDYLKGL LEGVNLKVER GNGENNILSI TLPKDSVSIW TNVKVK

« Hide

References

[1]"Complete sequence of Thermoanaerobacter sp. X514."
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Bruce D., Goodwin L., Saunders E., Brettin T., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Kim E., Hemme C., Fields M.W., He Z., Zhou J., Richardson P.
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: X514.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000923 Genomic DNA. Translation: ABY92474.1.
RefSeqYP_001662810.1. NC_010320.1.

3D structure databases

ProteinModelPortalB0K6J8.
ModBaseSearch...

Protein-protein interaction databases

STRINGB0K6J8.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5877966.
GenomeReviewsGene locus Teth514_1180 in contig CP000923_GR.
KEGGtex:Teth514_1180.
PATRIC23891992. VBITheSp86957_1233.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG726713.
OMAHTSTAEY.
ProtClustDBCLSK901435.

Enzyme and pathway databases

BioCycTSP1755:TETH514_1180-MONOMER.

Family and domain databases

InterProIPR006048. A-amylase_b_C.
IPR015902. Alpha_amylase.
IPR006046. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit.
G3DSA:3.20.20.80. Glyco_hydro_cat. 2 hits.
PANTHERPTHR10357. Alpha_amylase. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB0K6J8_THEPX
AccessionPrimary (citable) accession number: B0K6J8
Entry history
Integrated into UniProtKB/TrEMBL: March 18, 2008
Last sequence update: March 18, 2008
Last modified: December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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