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Protein
Submitted name:

LETM1 domain-containing 1

Gene

Letmd1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
LETM1 domain-containing 1Imported
Submitted name:
Letmd1 proteinImported
Gene namesi
Name:Letmd1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi1596738. Letmd1.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei138 – 161HelicalSequence analysisAdd BLAST24

GO - Cellular componenti

Keywords - Cellular componenti

Membrane, MitochondrionPROSITE-ProRule annotation

Expressioni

Gene expression databases

ExpressionAtlasiB0K026. baseline and differential.
GenevisibleiB0K026. RN.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini186 – 371Letm1 RBD (ribosome-binding)InterPro annotationAdd BLAST186

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG4263. Eukaryota.
ENOG410ZXCM. LUCA.
GeneTreeiENSGT00390000018328.
HOGENOMiHOG000037443.
HOVERGENiHBG108107.
OMAiMVGYAFF.
OrthoDBiEOG091G0GD0.
TreeFamiTF314047.

Family and domain databases

InterProiView protein in InterPro
IPR011685. LETM1.
IPR033122. LETM1_RBD.
PfamiView protein in Pfam
PF07766. LETM1. 1 hit.
PROSITEiView protein in PROSITE
PS51758. LETM1_RBD. 1 hit.

Sequencei

Sequence statusi: Complete.

B0K026-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALSRVCWSR AALWGSTVAP GPFVTRRLQL GRSGPAWRAP RSSKLHLSPK
60 70 80 90 100
ADVKNLISYV VTKTRAINGT YHRFLGRHFP RFYALYTTFI KGIQMLWADA
110 120 130 140 150
KKARRIKADM WKQNLKFHQL SYREMEHLRQ FRRDITKCLF IGLISIPPFA
160 170 180 190 200
NYLVFLLMYL FPRQLLVKHF WTPKQQIDFL DIYHGFRRRS HLEIITHLRR
210 220 230 240 250
ASALVSNEKL RWHLEDLCTK VQNGTHPTAQ DILALRDCFS TYPLGFSQLQ
260 270 280 290 300
ASQMRALSQA MLLTPYLPPP LLRWRLKSHT AVIHQLDRAL AKLGTGHLTP
310 320 330 340 350
QEVRSACYLR GLNSTHTSDD RCRTWLGEWL HISCSLKAIP GAAARKGHSI
360 370
HLREQRRLWP DKNDSSNKGD R
Length:371
Mass (Da):43,121
Last modified:March 18, 2008 - v1
Checksum:i6FEB00BCAF9C7321
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07058899 Genomic DNA. No translation available.
BC159426 mRNA. Translation: AAI59427.1.
RefSeqiNP_001116253.3. NM_001122781.3.
XP_006242416.1. XM_006242354.3.
UniGeneiRn.102946.

Genome annotation databases

EnsembliENSRNOT00000088681; ENSRNOP00000075497; ENSRNOG00000029855.
GeneIDi681352.
KEGGirno:681352.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiB0K026_RAT
AccessioniPrimary (citable) accession number: B0K026
Entry historyiIntegrated into UniProtKB/TrEMBL: March 18, 2008
Last sequence update: March 18, 2008
Last modified: July 5, 2017
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported