B0JRK7 (B0JRK7_MICAN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Ordered Locus Names:

MAE_09350

Organism

Microcystis aeruginosa (strain NIES-843) [Complete proteome] [HAMAP]

Taxonomic identifier

449447 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Microcystis

Protein attributes

Sequence length	414 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000715 SAAS SAAS013325
Molecular function	Sigma factor SAAS SAAS013325 RuleBase RU000715
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0JRK7 [UniParc]. Last modified March 18, 2008. Version 1. Checksum: 45EF022DD4A355E9	FASTA	414	47,305
	10 20 30 40 50 60 MSAINPSTLE TEFICPSFSI LKLKENSLDL DEDFLGSDLE DDLVSSPEKS YSNGTTTDLV 70 80 90 100 110 120 RLYLQDIGRV PLLKRDEEVE QAQQVQRHLS LLKLCAAAVK QGDAQVQQFV KLIEVRDQLT 130 140 150 160 170 180 AQLAHRPSLE RWAKTAQIRV SELKNALKAG KQRWAHLAGL EVGELEEIIA LGTRAKEQMI 190 200 210 220 230 240 KANLRLVVSV AKKYQNRGLE LLDLIQEGTL GLERAVKKFD PTKGYRFSTY AYWWIRQGMT 250 260 270 280 290 300 RAIATKSQII RLPVHITEKL NRIKKAQRKI SQMRGRTATV EEIAQELALT PEAVRELLMT 310 320 330 340 350 360 VPRSVSLEIK VGKEKDTELL DLLEIEAVSS ENHFVYESLQ RDIRELLADL TAREREVIEL 370 380 390 400 410 RYGFLDGKSH SLADIGRTLE LSRERVRQIE LKALQKLRQS QLHNQIRDYF EALS

References

[1]

"Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843." Kaneko T., Nakajima N., Okamoto S., Suzuki I., Tanabe Y., Tamaoki M., Nakamura Y., Kasai F., Watanabe A., Kawashima K., Kishida Y., Ono A., Shimizu Y., Takahashi C., Minami C., Fujishiro T., Kohara M., Katoh M. , Nakazaki N., Nakayama S., Yamada M., Tabata S., Watanabe M.M. DNA Res. 14:247-256(2007) [PubMed: 18192279] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP009552 Genomic DNA. Translation: BAG00757.1.
RefSeq	YP_001655949.1. NC_010296.1.
3D structure databases
ProteinModelPortal	B0JRK7.
SMR	B0JRK7. Positions 170-246.
ModBase	Search...
Protein-protein interaction databases
STRING	B0JRK7.
Proteomic databases
PRIDE	B0JRK7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5861733.
GenomeReviews	Gene locus MAE_09350 in contig AP009552_GR.
KEGG	mar:MAE_09350.
PATRIC	22627033. VBIMicAer59304_0856.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	B0JRK7.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0JRK7_MICAN

Accession

Primary (citable) accession number: B0JRK7

Entry history

Integrated into UniProtKB/TrEMBL:	March 18, 2008
Last sequence update:	March 18, 2008
Last modified:	December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)