SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

B0DXH7

- B0DXH7_LACBS

UniProt

B0DXH7 - B0DXH7_LACBS

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Alpha-amylase
Gene
LbAmy1b, LACBIDRAFT_395881
Organism
Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) (Bicoloured deceiver) (Laccaria laccata var. bicolor)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi141 – 1411Calcium 1 By similarityUniRule annotation
Metal bindingi187 – 1871Calcium 1; via carbonyl oxygen By similarityUniRule annotation
Metal bindingi200 – 2001Calcium 1 By similarityUniRule annotation
Active sitei231 – 2311Nucleophile By similarityUniRule annotation
Metal bindingi231 – 2311Calcium 2 By similarityUniRule annotation
Metal bindingi235 – 2351Calcium 1; via carbonyl oxygen By similarityUniRule annotation
Active sitei255 – 2551Proton donor By similarityUniRule annotation
Metal bindingi255 – 2551Calcium 2 By similarityUniRule annotation
Sitei322 – 3221Transition state stabilizer By similarityUniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: InterPro
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. carbohydrate catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Keywords - Ligandi

CalciumUniRule annotation, Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Name:LbAmy1bImported
ORF Names:LACBIDRAFT_395881Imported
OrganismiLaccaria bicolor (strain S238N-H82 / ATCC MYA-4686) (Bicoloured deceiver) (Laccaria laccata var. bicolor)
Taxonomic identifieri486041 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesTricholomataceaeLaccaria
ProteomesiUP000001194: Unassembled WGS sequence

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi50 ↔ 58 By similarity
Disulfide bondi175 ↔ 189 By similarity

Keywords - PTMi

Disulfide bondUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi29883.JGI313084.

Structurei

3D structure databases

ProteinModelPortaliB0DXH7.

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

KOiK01176.
OrthoDBiEOG7RBZJ4.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013777. A-amylase_fun.
IPR015340. A_amylase_DUF1966_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09260. DUF1966. 1 hit.
[Graphical view]
PIRSFiPIRSF001024. Alph-amyl_fung. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

B0DXH7-1 [UniParc]FASTAAdd to Basket

« Hide

MFATRFSVFS VLLLAVPTAL AASATDWRGR AIYQLLTDRF SLSTNQATSC    50
NTTQALYCNG TWNGITNHLD YIQGMGFDSI WISPIVANVE QTTAYGQAYH 100
GYWAQDITSL NPHFGTADDL KALSAALHKR NMYLMVDVVV NHFVSTSSVA 150
TSNNANLDFS KLVPFSNSSD FHPYCLITDY NNQTNVEQCW LGDQYLPLVD 200
LNTENPSIVS TMNNWIQGLV KSYGIDGLRI DTAKHVRKDF WPAFAKAAGV 250
FTMGEVLIGD VGYAAPYTEV LDSVLDYPNY YTLTSAFGSQ TGNFSALINT 300
VTASQKSYST PSVVGSFLEN HDNPRFQSIT QDISLVKNAM TWPFIQDGIP 350
ILYQGQEQGF TGGAMPGNRE ALWPTGFVTS NKPLVTHVTT LNAARKAAAA 400
ANSTFLTTPL KFIIQQDPSL LAVSKPPLVA LLSNLGSNST KSSTWVAPGV 450
ASANEVLVDV LSCAVVKADG SGGVSVPVVN GLPQVLIPAS ALAKNGTVCP 500
SVATGSSSGT SGGGKKSGVI SIRGGLGFGG MEDGWVVRML GVVLVGFLAQ 550
GW 552
Length:552
Mass (Da):58,889
Last modified:February 26, 2008 - v1
Checksum:i7F8B25A6B753BC3D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS547147 Genomic DNA. Translation: EDR00621.1.
RefSeqiXP_001888630.1. XM_001888595.1.

Genome annotation databases

GeneIDi6084269.
KEGGilbc:LACBIDRAFT_395881.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS547147 Genomic DNA. Translation: EDR00621.1 .
RefSeqi XP_001888630.1. XM_001888595.1.

3D structure databases

ProteinModelPortali B0DXH7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 29883.JGI313084.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 6084269.
KEGGi lbc:LACBIDRAFT_395881.

Phylogenomic databases

KOi K01176.
OrthoDBi EOG7RBZJ4.

Family and domain databases

Gene3Di 2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR013777. A-amylase_fun.
IPR015340. A_amylase_DUF1966_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF09260. DUF1966. 1 hit.
[Graphical view ]
PIRSFi PIRSF001024. Alph-amyl_fung. 1 hit.
PRINTSi PR00110. ALPHAAMYLASE.
SMARTi SM00642. Aamy. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis."
    Martin F., Aerts A., Ahren D., Brun A., Danchin E.G.J., Duchaussoy F., Gibon J., Kohler A., Lindquist E., Pereda V., Salamov A., Shapiro H.J., Wuyts J., Blaudez D., Buee M., Brokstein P., Canbaeck B., Cohen D.
    , Courty P.E., Coutinho P.M., Delaruelle C., Detter J.C., Deveau A., DiFazio S., Duplessis S., Fraissinet-Tachet L., Lucic E., Frey-Klett P., Fourrey C., Feussner I., Gay G., Grimwood J., Hoegger P.J., Jain P., Kilaru S., Labbe J., Lin Y.C., Legue V., Le Tacon F., Marmeisse R., Melayah D., Montanini B., Muratet M., Nehls U., Niculita-Hirzel H., Oudot-Le Secq M.P., Peter M., Quesneville H., Rajashekar B., Reich M., Rouhier N., Schmutz J., Yin T., Chalot M., Henrissat B., Kuees U., Lucas S., Van de Peer Y., Podila G.K., Polle A., Pukkila P.J., Richardson P.M., Rouze P., Sanders I.R., Stajich J.E., Tunlid A., Tuskan G., Grigoriev I.V.
    Nature 452:88-92(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S238N-H82 / ATCC MYA-4686.

Entry informationi

Entry nameiB0DXH7_LACBS
AccessioniPrimary (citable) accession number: B0DXH7
Entry historyi
Integrated into UniProtKB/TrEMBL: February 26, 2008
Last sequence update: February 26, 2008
Last modified: July 9, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi