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B0DXH7

- B0DXH7_LACBS

UniProt

B0DXH7 - B0DXH7_LACBS

Protein

Alpha-amylase

Gene

LbAmy1b

Organism
Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) (Bicoloured deceiver) (Laccaria laccata var. bicolor)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (26 Feb 2008)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi141 – 1411Calcium 1
    Metal bindingi187 – 1871Calcium 1; via carbonyl oxygen
    Metal bindingi200 – 2001Calcium 1
    Active sitei231 – 2311NucleophileUniRule annotation
    Metal bindingi231 – 2311Calcium 2
    Metal bindingi235 – 2351Calcium 1; via carbonyl oxygen
    Active sitei255 – 2551Proton donorUniRule annotation
    Metal bindingi255 – 2551Calcium 2
    Sitei322 – 3221Transition state stabilizerUniRule annotation

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. carbohydrate catabolic process Source: InterPro

    Keywords - Molecular functioni

    GlycosidaseUniRule annotation, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolismUniRule annotation

    Keywords - Ligandi

    CalciumUniRule annotation, Metal-bindingUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
    Gene namesi
    Name:LbAmy1bImported
    ORF Names:LACBIDRAFT_395881Imported
    OrganismiLaccaria bicolor (strain S238N-H82 / ATCC MYA-4686) (Bicoloured deceiver) (Laccaria laccata var. bicolor)Imported
    Taxonomic identifieri486041 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesTricholomataceaeLaccaria
    ProteomesiUP000001194: Unassembled WGS sequence

    PTM / Processingi

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Disulfide bondi50 ↔ 58UniRule annotation
    Disulfide bondi50 ↔ 58 By similarity
    Disulfide bondi175 ↔ 189UniRule annotation
    Disulfide bondi175 ↔ 189 By similarity

    Keywords - PTMi

    Disulfide bondUniRule annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi29883.JGI313084.

    Structurei

    3D structure databases

    ProteinModelPortaliB0DXH7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.UniRule annotation

    Phylogenomic databases

    KOiK01176.
    OrthoDBiEOG7RBZJ4.

    Family and domain databases

    Gene3Di2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR013777. A-amylase_fun.
    IPR015340. A_amylase_DUF1966_C.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF09260. DUF1966. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001024. Alph-amyl_fung. 1 hit.
    PRINTSiPR00110. ALPHAAMYLASE.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B0DXH7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFATRFSVFS VLLLAVPTAL AASATDWRGR AIYQLLTDRF SLSTNQATSC    50
    NTTQALYCNG TWNGITNHLD YIQGMGFDSI WISPIVANVE QTTAYGQAYH 100
    GYWAQDITSL NPHFGTADDL KALSAALHKR NMYLMVDVVV NHFVSTSSVA 150
    TSNNANLDFS KLVPFSNSSD FHPYCLITDY NNQTNVEQCW LGDQYLPLVD 200
    LNTENPSIVS TMNNWIQGLV KSYGIDGLRI DTAKHVRKDF WPAFAKAAGV 250
    FTMGEVLIGD VGYAAPYTEV LDSVLDYPNY YTLTSAFGSQ TGNFSALINT 300
    VTASQKSYST PSVVGSFLEN HDNPRFQSIT QDISLVKNAM TWPFIQDGIP 350
    ILYQGQEQGF TGGAMPGNRE ALWPTGFVTS NKPLVTHVTT LNAARKAAAA 400
    ANSTFLTTPL KFIIQQDPSL LAVSKPPLVA LLSNLGSNST KSSTWVAPGV 450
    ASANEVLVDV LSCAVVKADG SGGVSVPVVN GLPQVLIPAS ALAKNGTVCP 500
    SVATGSSSGT SGGGKKSGVI SIRGGLGFGG MEDGWVVRML GVVLVGFLAQ 550
    GW 552
    Length:552
    Mass (Da):58,889
    Last modified:February 26, 2008 - v1
    Checksum:i7F8B25A6B753BC3D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS547147 Genomic DNA. Translation: EDR00621.1.
    RefSeqiXP_001888630.1. XM_001888595.1.

    Genome annotation databases

    GeneIDi6084269.
    KEGGilbc:LACBIDRAFT_395881.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS547147 Genomic DNA. Translation: EDR00621.1 .
    RefSeqi XP_001888630.1. XM_001888595.1.

    3D structure databases

    ProteinModelPortali B0DXH7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 29883.JGI313084.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 6084269.
    KEGGi lbc:LACBIDRAFT_395881.

    Phylogenomic databases

    KOi K01176.
    OrthoDBi EOG7RBZJ4.

    Family and domain databases

    Gene3Di 2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR013777. A-amylase_fun.
    IPR015340. A_amylase_DUF1966_C.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF09260. DUF1966. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001024. Alph-amyl_fung. 1 hit.
    PRINTSi PR00110. ALPHAAMYLASE.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis."
      Martin F., Aerts A., Ahren D., Brun A., Danchin E.G.J., Duchaussoy F., Gibon J., Kohler A., Lindquist E., Pereda V., Salamov A., Shapiro H.J., Wuyts J., Blaudez D., Buee M., Brokstein P., Canbaeck B., Cohen D.
      , Courty P.E., Coutinho P.M., Delaruelle C., Detter J.C., Deveau A., DiFazio S., Duplessis S., Fraissinet-Tachet L., Lucic E., Frey-Klett P., Fourrey C., Feussner I., Gay G., Grimwood J., Hoegger P.J., Jain P., Kilaru S., Labbe J., Lin Y.C., Legue V., Le Tacon F., Marmeisse R., Melayah D., Montanini B., Muratet M., Nehls U., Niculita-Hirzel H., Oudot-Le Secq M.P., Peter M., Quesneville H., Rajashekar B., Reich M., Rouhier N., Schmutz J., Yin T., Chalot M., Henrissat B., Kuees U., Lucas S., Van de Peer Y., Podila G.K., Polle A., Pukkila P.J., Richardson P.M., Rouze P., Sanders I.R., Stajich J.E., Tunlid A., Tuskan G., Grigoriev I.V.
      Nature 452:88-92(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S238N-H82 / ATCC MYA-4686Imported.

    Entry informationi

    Entry nameiB0DXH7_LACBS
    AccessioniPrimary (citable) accession number: B0DXH7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 26, 2008
    Last sequence update: February 26, 2008
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3