B0CYF1 (B0CYF1_LACBS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Mitochondrial NAD-dependent isocitrate dehydrogenase subunit 2 EMBL EDR12440.1

Gene names

ORF Names:

LACBIDRAFT_311842 EMBL EDR12440.1

Organism

Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) (Bicoloured deceiver) (Laccaria laccata var. bicolor) [Complete proteome]

Taxonomic identifier

486041 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Basidiomycota › Agaricomycotina › Agaricomycetes › Agaricomycetidae › Agaricales › Tricholomataceae › Laccaria › Laccaria bicolor

Protein attributes

Sequence length	375 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the isocitrate and isopropylmalate dehydrogenases family. RuleBase RU004443

Ontologies

Keywords
Molecular function	Oxidoreductase RuleBase RU004444
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Molecular_function	NAD binding Inferred from electronic annotation. Source: InterPro isocitrate dehydrogenase (NAD+) activity Inferred from electronic annotation. Source: InterPro magnesium ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0CYF1 [UniParc]. Last modified February 26, 2008. Version 1. Checksum: A76641B74919833F	FASTA	375	40,529
	10 20 30 40 50 60 MFVSRSFPVA QGALKRTYPI RRYASGPPTA AFAGQKESNG KYTVTLIPGD GIGPEISQSI 70 80 90 100 110 120 KDIYTAANVP IQWEEVSVTP ILKGGKTVIP DSAIHSVKKN TVALKGPLAT PIGKGHVSLN 130 140 150 160 170 180 LTLRRTFNLF ANVRPCVSIK GFKTPYDDVN TVLIRENTEG EYSGIEHEVI DGVVQSIKLI 190 200 210 220 230 240 TWDASERVAR YAFHYAQSSG RKRVTAVHKA NIMKMSDGMF LSACREVAKE FPDVAYDEDL 250 260 270 280 290 300 LDRVCLQVVT NPKPYSDRVM VMPNLYGDIL SDMCAGLIGG LGLTPSGNIG RDASIFEAVH 310 320 330 340 350 360 GSAPDIAGKG LANPTALLLS SLMMLRHMNL YDHAEKIERA ALSTIAEGTT ITGDLGGKAT 370 TKEYTNAIIQ KLGRS

References

[1]

"The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis." Martin F., Aerts A., Ahren D., Brun A., Danchin E.G.J., Duchaussoy F., Gibon J., Kohler A., Lindquist E., Pereda V., Salamov A., Shapiro H.J., Wuyts J., Blaudez D., Buee M., Brokstein P., Canbaeck B., Cohen D. , Courty P.E., Coutinho P.M., Delaruelle C., Detter J.C., Deveau A., DiFazio S., Duplessis S., Fraissinet-Tachet L., Lucic E., Frey-Klett P., Fourrey C., Feussner I., Gay G., Grimwood J., Hoegger P.J., Jain P., Kilaru S., Labbe J., Lin Y.C., Legue V., Le Tacon F., Marmeisse R., Melayah D., Montanini B., Muratet M., Nehls U., Niculita-Hirzel H., Oudot-Le Secq M.P., Peter M., Quesneville H., Rajashekar B., Reich M., Rouhier N., Schmutz J., Yin T., Chalot M., Henrissat B., Kuees U., Lucas S., Van de Peer Y., Podila G.K., Polle A., Pukkila P.J., Richardson P.M., Rouze P., Sanders I.R., Stajich J.E., Tunlid A., Tuskan G., Grigoriev I.V. Nature 452:88-92(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S238N-H82 / ATCC MYA-4686.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DS547094 Genomic DNA. Translation: EDR12440.1.
RefSeq	XP_001876704.1. XM_001876669.1.
3D structure databases
ProteinModelPortal	B0CYF1.
SMR	B0CYF1. Positions 27-372.
ModBase	Search...
Protein-protein interaction databases
STRING	29883.JGI311842.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6072010.
KEGG	lbc:LACBIDRAFT_311842.
Phylogenomic databases
KO	K00030.
Family and domain databases
Gene3D	3.40.718.10. 1 hit.
InterPro	IPR019818. IsoCit/isopropylmalate_DH_CS. IPR001804. Isocitrate/isopropylmalate_DH. IPR004434. Isocitrate_DH_NAD. IPR024084. IsoPropMal-DH-like_dom. [Graphical view]
PANTHER	PTHR11835. PTHR11835. 1 hit.
Pfam	PF00180. Iso_dh. 1 hit. [Graphical view]
TIGRFAMs	TIGR00175. mito_nad_idh. 1 hit.
PROSITE	PS00470. IDH_IMDH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0CYF1_LACBS

Accession

Primary (citable) accession number: B0CYF1

Entry history

Integrated into UniProtKB/TrEMBL:	February 26, 2008
Last sequence update:	February 26, 2008
Last modified:	April 3, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)