Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

B0CPS5

- B0CPS5_LACBS

UniProt

B0CPS5 - B0CPS5_LACBS

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

DNA ligase

Gene

LACBIDRAFT_187450

Organism
Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) (Bicoloured deceiver) (Laccaria laccata var. bicolor)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:LACBIDRAFT_187450Imported
OrganismiLaccaria bicolor (strain S238N-H82 / ATCC MYA-4686) (Bicoloured deceiver) (Laccaria laccata var. bicolor)Imported
Taxonomic identifieri486041 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesTricholomataceaeLaccaria
ProteomesiUP000001194: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi29883.JGI187450.

Structurei

3D structure databases

ProteinModelPortaliB0CPS5.
SMRiB0CPS5. Positions 181-797.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiB0CPS5.
KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B0CPS5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGRQQTLAKF FDMPKSVKTP PPQQASLKEM WGKRPIVTKT EEEDEKQDAM
60 70 80 90 100
DIEPGNNSKA GSSKRTGALT RPGRSPKLKK RKIVQSNDEQ EEQPKRSTTA
110 120 130 140 150
VVVESGKPTS DDPATFSSQS LKRKQKESVD AVEDMDAAAS AGEGEEEVEN
160 170 180 190 200
DDSDMEVDDG VVSVSAQAAL RRKGEVDVKG GWKVGEPVLY AALTKAFSLI
210 220 230 240 250
EATTKRLEKT AILTSFLLLV IQRSAKADHN SLLQAVYLCI NRLSPDYVGV
260 270 280 290 300
ELGIGESLLI KAIAESTGRS LSLIKADLKR EGDLGLVAMN SKNSQKTLFK
310 320 330 340 350
PKPLTLPFVF SNLRDIALTT GNSSQAKKVS VITKLLAACQ DFEAKYIVRS
360 370 380 390 400
LEGKLRIGNA ERSVLVALAQ AVVLAEKEKV GKKWSQEKLT ARLEEGANII
410 420 430 440 450
KAVYSELPSY DKVIPALLEV GIDGLRDKCK LTPGVPLKPM LAKPTKAIGE
460 470 480 490 500
VLDRFENKRF TCEYKYDGER AQVHKLEDGT VDVFSRNSED MSKKYPDLVD
510 520 530 540 550
QLPRCIKEST KSFVLDAEAV AIDRLTGKLM PFQELSRRKR KDVKVEDIQV
560 570 580 590 600
QVCLFAFDLL YLNGEPLLQR PLYERRELLR QYFTPVPGEF DFAKSSDSET
610 620 630 640 650
TEEIQTFLEE SVKDGCEGLM VKMLDSDASY YEPSRRSVNW LKLKKDYLAG
660 670 680 690 700
VGDSLDLVVV GGYYGKGKRT NVYGAFLLAC YDSESEEYQT ICKIGTGFSE
710 720 730 740 750
ENLQAHYDAL KPLETTKVRG DIKVGGAKPD IWFEPKIVWE VLTADLSLSP
760 770 780 790 800
IYTAAQGLVE DRGISLRFPR FIRVRDDKGP DDATGPEQIA EMYERQALAQ
810
SNGKKKKGGD ADDGFW
Length:816
Mass (Da):90,576
Last modified:February 26, 2008 - v1
Checksum:i11389A672A9FBFF2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS547091 Genomic DNA. Translation: EDR14981.1.
RefSeqiXP_001873189.1. XM_001873154.1.

Genome annotation databases

GeneIDi6068938.
KEGGilbc:LACBIDRAFT_187450.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS547091 Genomic DNA. Translation: EDR14981.1 .
RefSeqi XP_001873189.1. XM_001873154.1.

3D structure databases

ProteinModelPortali B0CPS5.
SMRi B0CPS5. Positions 181-797.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 29883.JGI187450.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 6068938.
KEGGi lbc:LACBIDRAFT_187450.

Phylogenomic databases

InParanoidi B0CPS5.
KOi K10747.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis."
    Martin F., Aerts A., Ahren D., Brun A., Danchin E.G.J., Duchaussoy F., Gibon J., Kohler A., Lindquist E., Pereda V., Salamov A., Shapiro H.J., Wuyts J., Blaudez D., Buee M., Brokstein P., Canbaeck B., Cohen D.
    , Courty P.E., Coutinho P.M., Delaruelle C., Detter J.C., Deveau A., DiFazio S., Duplessis S., Fraissinet-Tachet L., Lucic E., Frey-Klett P., Fourrey C., Feussner I., Gay G., Grimwood J., Hoegger P.J., Jain P., Kilaru S., Labbe J., Lin Y.C., Legue V., Le Tacon F., Marmeisse R., Melayah D., Montanini B., Muratet M., Nehls U., Niculita-Hirzel H., Oudot-Le Secq M.P., Peter M., Quesneville H., Rajashekar B., Reich M., Rouhier N., Schmutz J., Yin T., Chalot M., Henrissat B., Kuees U., Lucas S., Van de Peer Y., Podila G.K., Polle A., Pukkila P.J., Richardson P.M., Rouze P., Sanders I.R., Stajich J.E., Tunlid A., Tuskan G., Grigoriev I.V.
    Nature 452:88-92(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S238N-H82 / ATCC MYA-4686Imported.

Entry informationi

Entry nameiB0CPS5_LACBS
AccessioniPrimary (citable) accession number: B0CPS5
Entry historyi
Integrated into UniProtKB/TrEMBL: February 26, 2008
Last sequence update: February 26, 2008
Last modified: October 29, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3