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B0CPS5 (B0CPS5_LACBS) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length816 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
B0CPS5 [UniParc].

Last modified February 26, 2008. Version 1.
Checksum: 11389A672A9FBFF2

FASTA81690,576
        10         20         30         40         50         60 
MGRQQTLAKF FDMPKSVKTP PPQQASLKEM WGKRPIVTKT EEEDEKQDAM DIEPGNNSKA 

        70         80         90        100        110        120 
GSSKRTGALT RPGRSPKLKK RKIVQSNDEQ EEQPKRSTTA VVVESGKPTS DDPATFSSQS 

       130        140        150        160        170        180 
LKRKQKESVD AVEDMDAAAS AGEGEEEVEN DDSDMEVDDG VVSVSAQAAL RRKGEVDVKG 

       190        200        210        220        230        240 
GWKVGEPVLY AALTKAFSLI EATTKRLEKT AILTSFLLLV IQRSAKADHN SLLQAVYLCI 

       250        260        270        280        290        300 
NRLSPDYVGV ELGIGESLLI KAIAESTGRS LSLIKADLKR EGDLGLVAMN SKNSQKTLFK 

       310        320        330        340        350        360 
PKPLTLPFVF SNLRDIALTT GNSSQAKKVS VITKLLAACQ DFEAKYIVRS LEGKLRIGNA 

       370        380        390        400        410        420 
ERSVLVALAQ AVVLAEKEKV GKKWSQEKLT ARLEEGANII KAVYSELPSY DKVIPALLEV 

       430        440        450        460        470        480 
GIDGLRDKCK LTPGVPLKPM LAKPTKAIGE VLDRFENKRF TCEYKYDGER AQVHKLEDGT 

       490        500        510        520        530        540 
VDVFSRNSED MSKKYPDLVD QLPRCIKEST KSFVLDAEAV AIDRLTGKLM PFQELSRRKR 

       550        560        570        580        590        600 
KDVKVEDIQV QVCLFAFDLL YLNGEPLLQR PLYERRELLR QYFTPVPGEF DFAKSSDSET 

       610        620        630        640        650        660 
TEEIQTFLEE SVKDGCEGLM VKMLDSDASY YEPSRRSVNW LKLKKDYLAG VGDSLDLVVV 

       670        680        690        700        710        720 
GGYYGKGKRT NVYGAFLLAC YDSESEEYQT ICKIGTGFSE ENLQAHYDAL KPLETTKVRG 

       730        740        750        760        770        780 
DIKVGGAKPD IWFEPKIVWE VLTADLSLSP IYTAAQGLVE DRGISLRFPR FIRVRDDKGP 

       790        800        810 
DDATGPEQIA EMYERQALAQ SNGKKKKGGD ADDGFW 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DS547091 Genomic DNA. Translation: EDR14981.1.
RefSeqXP_001873189.1. XM_001873154.1.

3D structure databases

ProteinModelPortalB0CPS5.
SMRB0CPS5. Positions 181-797.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING29883.JGI187450.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6068938.
KEGGlbc:LACBIDRAFT_187450.

Phylogenomic databases

KOK10747.
OrthoDBEOG7TXKRG.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB0CPS5_LACBS
AccessionPrimary (citable) accession number: B0CPS5
Entry history
Integrated into UniProtKB/TrEMBL: February 26, 2008
Last sequence update: February 26, 2008
Last modified: November 13, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)