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B0CPS5

- B0CPS5_LACBS

UniProt

B0CPS5 - B0CPS5_LACBS

Protein

DNA ligase

Gene

LACBIDRAFT_187450

Organism
Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) (Bicoloured deceiver) (Laccaria laccata var. bicolor)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (26 Feb 2008)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:LACBIDRAFT_187450Imported
    OrganismiLaccaria bicolor (strain S238N-H82 / ATCC MYA-4686) (Bicoloured deceiver) (Laccaria laccata var. bicolor)Imported
    Taxonomic identifieri486041 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesTricholomataceaeLaccaria
    ProteomesiUP000001194: Unassembled WGS sequence

    Interactioni

    Protein-protein interaction databases

    STRINGi29883.JGI187450.

    Structurei

    3D structure databases

    ProteinModelPortaliB0CPS5.
    SMRiB0CPS5. Positions 181-797.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    KOiK10747.
    OrthoDBiEOG7TXKRG.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B0CPS5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGRQQTLAKF FDMPKSVKTP PPQQASLKEM WGKRPIVTKT EEEDEKQDAM    50
    DIEPGNNSKA GSSKRTGALT RPGRSPKLKK RKIVQSNDEQ EEQPKRSTTA 100
    VVVESGKPTS DDPATFSSQS LKRKQKESVD AVEDMDAAAS AGEGEEEVEN 150
    DDSDMEVDDG VVSVSAQAAL RRKGEVDVKG GWKVGEPVLY AALTKAFSLI 200
    EATTKRLEKT AILTSFLLLV IQRSAKADHN SLLQAVYLCI NRLSPDYVGV 250
    ELGIGESLLI KAIAESTGRS LSLIKADLKR EGDLGLVAMN SKNSQKTLFK 300
    PKPLTLPFVF SNLRDIALTT GNSSQAKKVS VITKLLAACQ DFEAKYIVRS 350
    LEGKLRIGNA ERSVLVALAQ AVVLAEKEKV GKKWSQEKLT ARLEEGANII 400
    KAVYSELPSY DKVIPALLEV GIDGLRDKCK LTPGVPLKPM LAKPTKAIGE 450
    VLDRFENKRF TCEYKYDGER AQVHKLEDGT VDVFSRNSED MSKKYPDLVD 500
    QLPRCIKEST KSFVLDAEAV AIDRLTGKLM PFQELSRRKR KDVKVEDIQV 550
    QVCLFAFDLL YLNGEPLLQR PLYERRELLR QYFTPVPGEF DFAKSSDSET 600
    TEEIQTFLEE SVKDGCEGLM VKMLDSDASY YEPSRRSVNW LKLKKDYLAG 650
    VGDSLDLVVV GGYYGKGKRT NVYGAFLLAC YDSESEEYQT ICKIGTGFSE 700
    ENLQAHYDAL KPLETTKVRG DIKVGGAKPD IWFEPKIVWE VLTADLSLSP 750
    IYTAAQGLVE DRGISLRFPR FIRVRDDKGP DDATGPEQIA EMYERQALAQ 800
    SNGKKKKGGD ADDGFW 816
    Length:816
    Mass (Da):90,576
    Last modified:February 26, 2008 - v1
    Checksum:i11389A672A9FBFF2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS547091 Genomic DNA. Translation: EDR14981.1.
    RefSeqiXP_001873189.1. XM_001873154.1.

    Genome annotation databases

    GeneIDi6068938.
    KEGGilbc:LACBIDRAFT_187450.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS547091 Genomic DNA. Translation: EDR14981.1 .
    RefSeqi XP_001873189.1. XM_001873154.1.

    3D structure databases

    ProteinModelPortali B0CPS5.
    SMRi B0CPS5. Positions 181-797.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 29883.JGI187450.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 6068938.
    KEGGi lbc:LACBIDRAFT_187450.

    Phylogenomic databases

    KOi K10747.
    OrthoDBi EOG7TXKRG.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis."
      Martin F., Aerts A., Ahren D., Brun A., Danchin E.G.J., Duchaussoy F., Gibon J., Kohler A., Lindquist E., Pereda V., Salamov A., Shapiro H.J., Wuyts J., Blaudez D., Buee M., Brokstein P., Canbaeck B., Cohen D.
      , Courty P.E., Coutinho P.M., Delaruelle C., Detter J.C., Deveau A., DiFazio S., Duplessis S., Fraissinet-Tachet L., Lucic E., Frey-Klett P., Fourrey C., Feussner I., Gay G., Grimwood J., Hoegger P.J., Jain P., Kilaru S., Labbe J., Lin Y.C., Legue V., Le Tacon F., Marmeisse R., Melayah D., Montanini B., Muratet M., Nehls U., Niculita-Hirzel H., Oudot-Le Secq M.P., Peter M., Quesneville H., Rajashekar B., Reich M., Rouhier N., Schmutz J., Yin T., Chalot M., Henrissat B., Kuees U., Lucas S., Van de Peer Y., Podila G.K., Polle A., Pukkila P.J., Richardson P.M., Rouze P., Sanders I.R., Stajich J.E., Tunlid A., Tuskan G., Grigoriev I.V.
      Nature 452:88-92(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S238N-H82 / ATCC MYA-4686Imported.

    Entry informationi

    Entry nameiB0CPS5_LACBS
    AccessioniPrimary (citable) accession number: B0CPS5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 26, 2008
    Last sequence update: February 26, 2008
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3