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B0C0R4 (B0C0R4_ACAM1) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
1,4-alpha-glucan branching enzyme GlgB HAMAP MF_00685
EC=2.4.1.18 HAMAP MF_00685
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase HAMAP MF_00685
Alpha-(1->4)-glucan branching enzyme HAMAP MF_00685
Glycogen branching enzyme HAMAP MF_00685
Gene names
Name:glgB HAMAP MF_00685 EMBL ABW26038.1
Ordered Locus Names:AM1_0996
OrganismAcaryochloris marina (strain MBIC 11017) [Complete proteome] [HAMAP]
Taxonomic identifier329726 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Chroococcales › Acaryochloris

Protein attributes

Sequence length769 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP MF_00685

Catalytic activity

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP MF_00685 SAAS SAAS006407

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP MF_00685 SAAS SAAS006407

Subunit structure

Monomer By similarity. HAMAP MF_00685

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. HAMAP MF_00685

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site4321Nucleophile By similarity HAMAP MF_00685
Active site4851Proton donor By similarity HAMAP MF_00685

Sequences

Sequence LengthMass (Da)Tools
B0C0R4 [UniParc].

Last modified February 26, 2008. Version 1.
Checksum: 0C1F3A246D63FA04

FASTA76989,274
        10         20         30         40         50         60 
MSTPLTADQV NRIVWNHHHD PFEVLGPHPS QDGKSGWVVR AYWPKADAIS VVCPEHRQEY 

        70         80         90        100        110        120 
PMQSVHDPHF FECEVPIPGA LNYQLRVKEG SHEQVLYDPY AFKSPRVTEY DQHLFAEGNH 

       130        140        150        160        170        180 
HRIYEKLGAH LTTLDGVEGV YFALWAPNAR NVSLLGDFNA WDGRQHQMRK GPSGIWELFI 

       190        200        210        220        230        240 
PELSIGEHYK YEVKNYEGHI YEKSDPYGFQ QEVRPKTASI VTDLNSYSWS DESWMEQRRN 

       250        260        270        280        290        300 
ADALAQPISI YEVHLGSWMH ASSDEPPTSE EGHPLPPVIV SELKPGARFL TYRELAERLI 

       310        320        330        340        350        360 
PYVKDLGFTH IELLPVAEHP FDGSWGYQVT GYYACTSRYG TPEDFMYFVD QCHQQDIGVI 

       370        380        390        400        410        420 
VDWVPGHFPK DGHGLAFFDG THLYEHADPR KGEHKEWGTL VFNYSRKEVK NFLIANALFW 

       430        440        450        460        470        480 
FDKYHIDGIR VDAVASMLYL NYCRKDGEWV ANEYGGAENI EAADFLRHLN DVLFSYYPGI 

       490        500        510        520        530        540 
LSIAEESTSW PMVSWPTYVG GLGFNLKWNM GWMHDMLDYF NMDPWFRQFH QNNVTFSIMY 

       550        560        570        580        590        600 
AFSENFMLAL SHDEIVHGKS NMLGKMPGDE WQKFANLRCL YTFMFTHPGK KTLFMSMEFG 

       610        620        630        640        650        660 
QWSEWNVWGD LEWQLLQYDP HQNLKKFVTD LNHLYKELPA LFTNDFSYDG FEWVDCNDNR 

       670        680        690        700        710        720 
HSVISFVRRA KDSDEFVLTV CNLTPQPHSH YRVGVPEAGY YVERFNSDGR QYGGSNMGNL 

       730        740        750        760 
GGKWTDEWAF HNRPYSLDLC LPPLATLVFT LDREKTAQAY QQLPDSQNQ

« Hide

References

[1]"Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina."
Swingley W.D., Chen M., Cheung P.C., Conrad A.L., Dejesa L.C., Hao J., Honchak B.M., Karbach L.E., Kurdoglu A., Lahiri S., Mastrian S.D., Miyashita H., Page L., Ramakrishna P., Satoh S., Sattley W.M., Shimada Y., Taylor H.L. expand/collapse author list , Tomo T., Tsuchiya T., Wang Z.T., Raymond J., Mimuro M., Blankenship R.E., Touchman J.W.
Proc. Natl. Acad. Sci. U.S.A. 105:2005-2010(2008) [PubMed: 18252824] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000828 Genomic DNA. Translation: ABW26038.1.
RefSeqYP_001515352.1. NC_009925.1.

3D structure databases

ProteinModelPortalB0C0R4.
ModBaseSearch...

Protein-protein interaction databases

STRINGB0C0R4.

Protein family/group databases

CAZyCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5679822.
GenomeReviewsGene locus AM1_0996 in contig CP000828_GR.
KEGGamr:AM1_0996.
PATRIC20616476. VBIAcaMar40141_0887.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG287139.
OMADGTCLYE.
PhylomeDBB0C0R4.
ProtClustDBPRK05402.

Family and domain databases

HAMAPMF_00685. GlgB.
[Tree]
InterProIPR006407. 1-4-A-glucan_branch_enz.
IPR006048. A-amylase_b_C.
IPR015902. Alpha_amylase.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
Gene3DG3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit.
G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
G3DSA:2.60.40.10. Ig-like_fold. 2 hits.
KOK00700.
PANTHERPTHR10357. Alpha_amylase. 1 hit.
PTHR10357:SF13. PTHR10357:SF13. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 2 hits.
[Graphical view]
PIRSFPIRSF000463. GlgB. 1 hit.
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
SSF81296. Ig_E-set. 1 hit.
TIGRFAMsTIGR01515. Branching_enzym. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB0C0R4_ACAM1
AccessionPrimary (citable) accession number: B0C0R4
Entry history
Integrated into UniProtKB/TrEMBL: February 26, 2008
Last sequence update: February 26, 2008
Last modified: December 14, 2011
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info