B0BYV8 (B0BYV8_ACAM1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Name:	rpoD EMBL ABW27124.1
Ordered Locus Names:	AM1_2109

Organism

Acaryochloris marina (strain MBIC 11017) [Complete proteome] [HAMAP]

Taxonomic identifier

329726 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Acaryochloris

Protein attributes

Sequence length	423 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000715 SAAS SAAS013325
Molecular function	Sigma factor RuleBase RU000715 SAAS SAAS013325
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0BYV8 [UniParc]. Last modified February 26, 2008. Version 1. Checksum: BCC17390E7E6077A	FASTA	423	48,422
	10 20 30 40 50 60 MSAIPQKAEV IHAVYDGQGN SRDLDQNSNE PEEVEFDPNA DLDDDASEDL AALKMTPISA 70 80 90 100 110 120 ANRRGTTDLV RLYLQEIGRV SLLERDEEVA EAQKVQRYMH LLETREEFLE SHPVIAEYAR 130 140 150 160 170 180 LTDVRDRLTA MLGHRPSFNR WAKEADIPVA DLKPRLAEGK TAWAEKAELS NAELDQIVKQ 190 200 210 220 230 240 GIKAKEHMIQ ANLRLVVSVA KKYQNRGLEL LDLIQEGTLG LERAVEKFDP TKGYRFSTYA 250 260 270 280 290 300 YWWIRQGITR AIATQSRTIR LPVHITEKLN KIKKAQRKLS QSKGRTASIE DIAQEMDMTP 310 320 330 340 350 360 EQIRELLVRV PRSVSLEIKV GKDKDTELGD LLETDDISPE ELIMRESLQQ ELKQLLADLT 370 380 390 400 410 420 PRERDVITMR FGLNDGKTHS LAQIGKSLDL SRERVRQIES KALQKLRQPK RRNRIRDFLE AFA

References

[1]

"Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina." Swingley W.D., Chen M., Cheung P.C., Conrad A.L., Dejesa L.C., Hao J., Honchak B.M., Karbach L.E., Kurdoglu A., Lahiri S., Mastrian S.D., Miyashita H., Page L., Ramakrishna P., Satoh S., Sattley W.M., Shimada Y., Taylor H.L. , Tomo T., Tsuchiya T., Wang Z.T., Raymond J., Mimuro M., Blankenship R.E., Touchman J.W. Proc. Natl. Acad. Sci. U.S.A. 105:2005-2010(2008) [PubMed: 18252824] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000828 Genomic DNA. Translation: ABW27124.1.
RefSeq	YP_001516438.1. NC_009925.1.
3D structure databases
ProteinModelPortal	B0BYV8.
SMR	B0BYV8. Positions 183-255.
ModBase	Search...
Protein-protein interaction databases
STRING	B0BYV8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5680923.
GenomeReviews	Gene locus AM1_2109 in contig CP000828_GR.
KEGG	amr:AM1_2109.
PATRIC	20618556. VBIAcaMar40141_1914.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	B0BYV8.
ProtClustDB	PRK07598.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0BYV8_ACAM1

Accession

Primary (citable) accession number: B0BYV8

Entry history

Integrated into UniProtKB/TrEMBL:	February 26, 2008
Last sequence update:	February 26, 2008
Last modified:	December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)