Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciAPLE434271:GIX7-1802-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP subunit beta'UniRule annotation
Alternative name(s):
RNA polymerase subunit beta'UniRule annotation
Transcriptase subunit beta'UniRule annotation
Gene namesi
Name:rpoCUniRule annotation
Ordered Locus Names:APJL_1763
OrganismiActinobacillus pleuropneumoniae serotype 3 (strain JL03)
Taxonomic identifieri434271 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeActinobacillus
Proteomesi
  • UP000008547 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14231423DNA-directed RNA polymerase subunit beta'PRO_0000353276Add
BLAST

Proteomic databases

PRIDEiB0BSF6.

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliB0BSF6.
SMRiB0BSF6. Positions 909-943, 945-1129.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000218386.
KOiK03046.
OMAiYFAAYMI.
OrthoDBiEOG6M9DS6.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 2 hits.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

B0BSF6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKDLVKFLKA QSKSNDDFDV IKIGLASPDK IRSWSFGEVK KPETINYRTF
60 70 80 90 100
KPERDGLFCA RIFGPVKDYE CLCGKYKRLK HRGVICEKCG VEVTQTKVRR
110 120 130 140 150
DRMGHIELAC PVAHIWFLKS LPSRIGLILD MPLRDIERVL YFESYVVTEP
160 170 180 190 200
GMTDLEKNQL LTEEQFLDAE ERWGDEFEAK MGAEGIQALL RDMDLEHQCE
210 220 230 240 250
MMREELQETN SETKRKKITK RLKLLEAFQQ SGNKPEWMVM TVLPVLPPDL
260 270 280 290 300
RPLVPLDGGR FATSDLNDLY RRVINRNNRL KRLLDLVAPD IIVRNEKRML
310 320 330 340 350
QKSVDALLDN GRRGRAITGS NKRPLKSLAD MIKGKQGRFR QNLLGKRVDY
360 370 380 390 400
SGRSVITVGP YLHLHQCGLP KKMALELFRP FIYSKLESRG IASTIKAAKK
410 420 430 440 450
MVEREEPIVW DILAEVIREH PILLNRAPTL HRLGIQAFEP ILIEGKAIQL
460 470 480 490 500
HPLVCAAFNA DFDGDQMAVH VPLTLEAQLE ARALMMSTNN VLSPASGDPI
510 520 530 540 550
IVPSQDVVLG LYYMTREKVN AKGEGMYFLD PREAEKAYRT GQAELHARVK
560 570 580 590 600
VRITEHVKNE AGELVAETKL LDTTIGRAIL WMIAPKGMPF KVFNQTLGKK
610 620 630 640 650
AISKLINESY RRLGLKESVI LADQIMYTGF AYAARSGASV GIDDMVIPAQ
660 670 680 690 700
KHEIIRAAEA EVAEIQEQFN SGLVTAGERY NKVIDIWAAA NERVAKAMME
710 720 730 740 750
NLSTEEVINR EGNPEKQASF NSIFMMADSG ARGSAAQIRQ LAGMRGLMAR
760 770 780 790 800
PDGSIIETPI TANFREGLNV LQYFISTHGA RKGLADTALK TANSGYLTRR
810 820 830 840 850
LVDVAQDLVI TEDDCGTHEG IVMTPLIEGG DVKEALRDRV LGRVVAEDVL
860 870 880 890 900
KPGTEEVLIP RNTLIDEKWC DVIDAESVDV IKVRSVVTCN TDFGVCAKCY
910 920 930 940 950
GRDLARGHLI NQGEAVGVIA AQSIGEPGTQ LTMRTFHIGG AASAAAKESS
960 970 980 990 1000
IQVKNAGTIK LTNAKFVTNK EGKIVLTSRN TELTVIDTFG RTKENYKVPY
1010 1020 1030 1040 1050
GAVLSKNDGA EVAVGEVVAN WDPHTMPVIS EVSGRIQFSD IVDGLTVTRQ
1060 1070 1080 1090 1100
TDELTGLSSI VVQDVGERAT AGKDLRPALR LVDAQGNDIL IPGTDVAAQY
1110 1120 1130 1140 1150
FLPGKAIVTL DDGAEIEVGE ALARIPQESV GTKDITGGLP RVADLFEARK
1160 1170 1180 1190 1200
PKEPAILAEI SGIVSFGKET KGKRRLVITP AEGEAFEEMI PKWRQLNVFE
1210 1220 1230 1240 1250
GEMVQRGDVI SDGAETPHDI LRLRGVHAVT DYIVNEVQEV YRLQGVKIND
1260 1270 1280 1290 1300
KHIEVIVRQM LRKAVITNAY DSEFLEGEQV EVSRVKIANR KRAEEGKPLV
1310 1320 1330 1340 1350
EFERELLGIT KASLATESFI SAASFQETTR VLTEAAVAGK RDELRGLKEN
1360 1370 1380 1390 1400
VIVGRLIPAG TGFAYHQARA KKRSQPEQAV AFEAPVAKAN GFATDADIEA
1410 1420
EFEFVADDAT QSLAALLNAG DEE
Length:1,423
Mass (Da):157,529
Last modified:February 26, 2008 - v1
Checksum:i06E787D84A141351
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000687 Genomic DNA. Translation: ABY70313.1.
RefSeqiWP_012263370.1. NC_010278.1.

Genome annotation databases

EnsemblBacteriaiABY70313; ABY70313; APJL_1763.
KEGGiapj:APJL_1763.
PATRICi20752850. VBIActPle136345_1754.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000687 Genomic DNA. Translation: ABY70313.1.
RefSeqiWP_012263370.1. NC_010278.1.

3D structure databases

ProteinModelPortaliB0BSF6.
SMRiB0BSF6. Positions 909-943, 945-1129.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiB0BSF6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABY70313; ABY70313; APJL_1763.
KEGGiapj:APJL_1763.
PATRICi20752850. VBIActPle136345_1754.

Phylogenomic databases

HOGENOMiHOG000218386.
KOiK03046.
OMAiYFAAYMI.
OrthoDBiEOG6M9DS6.

Enzyme and pathway databases

BioCyciAPLE434271:GIX7-1802-MONOMER.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 2 hits.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome biology of Actinobacillus pleuropneumoniae JL03, an isolate of serotype 3 prevalent in China."
    Xu Z., Zhou Y., Li L., Zhou R., Xiao S., Wan Y., Zhang S., Wang K., Li W., Li L., Jin H., Kang M., Dalai B., Li T., Liu L., Cheng Y., Zhang L., Xu T.
    , Zheng H., Pu S., Wang B., Gu W., Zhang X.L., Zhu G.-F., Wang S., Zhao G.-P., Chen H.
    PLoS ONE 3:E1450-E1450(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JL03.

Entry informationi

Entry nameiRPOC_ACTPJ
AccessioniPrimary (citable) accession number: B0BSF6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 4, 2008
Last sequence update: February 26, 2008
Last modified: July 6, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.