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Protein
Submitted name:

Use1 protein

Gene

Use1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  1. endoplasmic reticulum tubular network organization Source: Ensembl
  2. regulation of ER to Golgi vesicle-mediated transport Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Use1 proteinImported
Gene namesi
Name:Use1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1306660. Use1.

Subcellular locationi

GO - Cellular componenti

  1. endoplasmic reticulum Source: Ensembl
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiB0BNG6.
PRIDEiB0BNG6.

Expressioni

Gene expression databases

ExpressionAtlasiB0BNG6. baseline.
GenevestigatoriB0BNG6.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000022650.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG299387.
HOGENOMiHOG000007677.
HOVERGENiHBG079328.
KOiK08507.
PhylomeDBiB0BNG6.

Family and domain databases

InterProiIPR019150. Vesicle_transport_protein_Use1.
[Graphical view]
PfamiPF09753. Use1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

B0BNG6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
ACHRPLATSR LELNLVRLLC RCESMAAEKR EPDEWRLEKY VGALEDMLQA
60 70 80 90 100
LKVQASKPAS EVISEYSRKV DFLKGMLQAE KLTSSSEKAL ANQFLAPGRV
110 120 130 140 150
PTTAKERVPA TKTVHLQSRA RYTSEMRSEL LGTESSGELE ADMRKRVVKG
160 170 180 190 200
PRPADEKQSA SELDLVLQRH QGLQEKLAEE MLGLARSLKT NTLAAQSVIK
210 220 230 240 250
KDNQTLSHSL KMADQNLEKL KLESERLEQH AQKSVNWLLW AMLIVVCFVF
260
ISMILFIRIM PRLK
Length:264
Mass (Da):29,926
Last modified:February 26, 2008 - v1
Checksum:iDE5E87A055ECF3EE
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC158812 mRNA. Translation: AAI58813.1.
RefSeqiNP_001162571.1. NM_001169100.1.
UniGeneiRn.2957.

Genome annotation databases

GeneIDi290627.
KEGGirno:290627.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC158812 mRNA. Translation: AAI58813.1.
RefSeqiNP_001162571.1. NM_001169100.1.
UniGeneiRn.2957.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000022650.

Proteomic databases

PaxDbiB0BNG6.
PRIDEiB0BNG6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi290627.
KEGGirno:290627.

Organism-specific databases

CTDi55850.
RGDi1306660. Use1.

Phylogenomic databases

eggNOGiNOG299387.
HOGENOMiHOG000007677.
HOVERGENiHBG079328.
KOiK08507.
PhylomeDBiB0BNG6.

Miscellaneous databases

NextBioi631314.

Gene expression databases

ExpressionAtlasiB0BNG6. baseline.
GenevestigatoriB0BNG6.

Family and domain databases

InterProiIPR019150. Vesicle_transport_protein_Use1.
[Graphical view]
PfamiPF09753. Use1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: LiverImported.

Entry informationi

Entry nameiB0BNG6_RAT
AccessioniPrimary (citable) accession number: B0BNG6
Entry historyi
Integrated into UniProtKB/TrEMBL: February 26, 2008
Last sequence update: February 26, 2008
Last modified: October 29, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.