B0BNG6 (B0BNG6_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Use1 protein EMBL AAI58813.1

Gene names

Name:

Use1 EMBL AAI58813.1 RGD 1306660

Organism

Rattus norvegicus (Rat) EMBL AAI58813.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	264 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological_process	endoplasmic reticulum tubular network organization Inferred from electronic annotation. Source: Compara regulation of ER to Golgi vesicle-mediated transport Inferred from electronic annotation. Source: Compara
Cellular_component	endoplasmic reticulum Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL AAI58813.1

Sequences

	Sequence		Length	Mass (Da)
	B0BNG6 [UniParc]. Last modified February 26, 2008. Version 1. Checksum: DE5E87A055ECF3EE	FASTA	264	29,926
	10 20 30 40 50 60 ACHRPLATSR LELNLVRLLC RCESMAAEKR EPDEWRLEKY VGALEDMLQA LKVQASKPAS 70 80 90 100 110 120 EVISEYSRKV DFLKGMLQAE KLTSSSEKAL ANQFLAPGRV PTTAKERVPA TKTVHLQSRA 130 140 150 160 170 180 RYTSEMRSEL LGTESSGELE ADMRKRVVKG PRPADEKQSA SELDLVLQRH QGLQEKLAEE 190 200 210 220 230 240 MLGLARSLKT NTLAAQSVIK KDNQTLSHSL KMADQNLEKL KLESERLEQH AQKSVNWLLW 250 260 AMLIVVCFVF ISMILFIRIM PRLK

References

[1]

"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J. Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Liver EMBL AAI58813.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC158812 mRNA. Translation: AAI58813.1.
IPI	IPI00362609.
RefSeq	NP_001162571.1. NM_001169100.1.
UniGene	Rn.2957.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	10116.ENSRNOP00000022650. B0BNG6.
Proteomic databases
PaxDb	B0BNG6.
PRIDE	B0BNG6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	290627.
KEGG	rno:290627.
Organism-specific databases
CTD	55850.
Phylogenomic databases
eggNOG	NOG299387.
HOGENOM	HOG000007677.
HOVERGEN	HBG079328.
KO	K08507.
OrthoDB	EOG402WSW.
Gene expression databases
ArrayExpress	B0BNG6.
Genevestigator	B0BNG6.
Family and domain databases
InterPro	IPR019150. Vesicle_transport_protein_Use1. [Graphical view]
Pfam	PF09753. Use1. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	631314.

Entry information

Entry name

B0BNG6_RAT

Accession

Primary (citable) accession number: B0BNG6

Entry history

Integrated into UniProtKB/TrEMBL:	February 26, 2008
Last sequence update:	February 26, 2008
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)