Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

B0BNA1 (SH3Y1_RAT) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
SH3 domain-containing YSC84-like protein 1
Gene names
Name:Sh3yl1
OrganismRattus norvegicus (Rat) [Reference proteome]
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length340 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subunit structure

Interacts with SH3D19 By similarity.

Sequence similarities

Belongs to the SH3YL1 family.

Contains 1 SH3 domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 340340SH3 domain-containing YSC84-like protein 1
PRO_0000341563

Regions

Domain281 – 34060SH3

Sequences

Sequence LengthMass (Da)Tools
B0BNA1 [UniParc].

Last modified February 26, 2008. Version 1.
Checksum: E270CE133944F421

FASTA34037,039
        10         20         30         40         50         60 
MNNPIPSNLK SEAKKAAKIL REFTEITSRN GPDKIIPAHV IAKAKGLAVL SVIKAGFLVT 

        70         80         90        100        110        120 
ARGGSGIVLA RLPDGKWSAP SAIGIAGLGG GFEIGIEVSD LVIILNYDRA VEAFAKGGNL 

       130        140        150        160        170        180 
TLGGNFTVAV GPLGRNLEGN VSLRSSAAVF TYCKSRGLFA GISLEGSCLI ERKETNRKFY 

       190        200        210        220        230        240 
CQDIRAYDIL FGDVPQPAQA EDLYEILNSF TEKYETEGQR INLKKVAREQ RKAKELPPKP 

       250        260        270        280        290        300 
SSRPQPSRPP VQLNAGSQSN RNEYKLYPEL SSYHEKTGSL SQPIEVTALY SFEGQQPGDL 

       310        320        330        340 
NFQAGDRIIV ISKTDSNFDW WEGKLRGQTG IFPANYVTMN 

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Spleen.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC158742 mRNA. Translation: AAI58743.1.
RefSeqNP_001102175.1. NM_001108705.2.
UniGeneRn.1163.

3D structure databases

ProteinModelPortalB0BNA1.
SMRB0BNA1. Positions 271-340.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000060428.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000068208; ENSRNOP00000060428; ENSRNOG00000005522.
GeneID362724.
KEGGrno:362724.
UCSCRGD:1306440. rat.

Organism-specific databases

CTD26751.
RGD1306440. Sh3yl1.

Phylogenomic databases

eggNOGCOG2930.
GeneTreeENSGT00510000048137.
HOGENOMHOG000215564.
HOVERGENHBG108487.
OMAANEKMYN.
OrthoDBEOG7MPRFM.
PhylomeDBB0BNA1.
TreeFamTF331022.

Gene expression databases

GenevestigatorB0BNA1.

Family and domain databases

InterProIPR001452. SH3_domain.
IPR007461. Ysc84_actin-binding.
[Graphical view]
PfamPF04366. DUF500. 1 hit.
PF00018. SH3_1. 1 hit.
[Graphical view]
PRINTSPR00452. SH3DOMAIN.
SMARTSM00326. SH3. 1 hit.
[Graphical view]
SUPFAMSSF50044. SSF50044. 1 hit.
PROSITEPS50002. SH3. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio681005.

Entry information

Entry nameSH3Y1_RAT
AccessionPrimary (citable) accession number: B0BNA1
Entry history
Integrated into UniProtKB/Swiss-Prot: June 10, 2008
Last sequence update: February 26, 2008
Last modified: April 16, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families