B0BNA1 (SH3Y1_RAT) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
SH3 domain-containing YSC84-like protein 1

Gene names

Name:

Sh3yl1

Organism

Rattus norvegicus (Rat) [Reference proteome]

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	340 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Subunit structure	Interacts with SH3D19 By similarity.
Sequence similarities	Belongs to the SH3YL1 family. Contains 1 SH3 domain.

Ontologies

Keywords
Domain	SH3 domain
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	phosphatidylinositol biosynthetic process Inferred from electronic annotation. Source: Compara regulation of ruffle assembly Inferred from electronic annotation. Source: Compara
Cellular_component	ruffle membrane Inferred from electronic annotation. Source: Compara
Molecular_function	phosphatidylinositol binding Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 340	340	SH3 domain-containing YSC84-like protein 1		PRO_0000341563
Regions
	Domain	281 – 340	60	SH3

Sequences

	Sequence		Length	Mass (Da)
	B0BNA1 [UniParc]. Last modified February 26, 2008. Version 1. Checksum: E270CE133944F421	FASTA	340	37,039
	10 20 30 40 50 60 MNNPIPSNLK SEAKKAAKIL REFTEITSRN GPDKIIPAHV IAKAKGLAVL SVIKAGFLVT 70 80 90 100 110 120 ARGGSGIVLA RLPDGKWSAP SAIGIAGLGG GFEIGIEVSD LVIILNYDRA VEAFAKGGNL 130 140 150 160 170 180 TLGGNFTVAV GPLGRNLEGN VSLRSSAAVF TYCKSRGLFA GISLEGSCLI ERKETNRKFY 190 200 210 220 230 240 CQDIRAYDIL FGDVPQPAQA EDLYEILNSF TEKYETEGQR INLKKVAREQ RKAKELPPKP 250 260 270 280 290 300 SSRPQPSRPP VQLNAGSQSN RNEYKLYPEL SSYHEKTGSL SQPIEVTALY SFEGQQPGDL 310 320 330 340 NFQAGDRIIV ISKTDSNFDW WEGKLRGQTG IFPANYVTMN

References

[1]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Spleen.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC158742 mRNA. Translation: AAI58743.1.
IPI	IPI00870914.
RefSeq	NP_001102175.1. NM_001108705.2.
UniGene	Rn.1163.
3D structure databases
ProteinModelPortal	B0BNA1.
SMR	B0BNA1. Positions 271-340.
ModBase	Search...
Protein-protein interaction databases
STRING	10116.ENSRNOP00000060428.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000068208; ENSRNOP00000060428; ENSRNOG00000005522.
GeneID	362724.
KEGG	rno:362724.
UCSC	RGD:1306440. rat.
Organism-specific databases
CTD	26751.
RGD	1306440. Sh3yl1.
Phylogenomic databases
eggNOG	COG2930.
GeneTree	ENSGT00510000048137.
HOGENOM	HOG000215564.
HOVERGEN	HBG108487.
OrthoDB	EOG4BRWMF.
Gene expression databases
ArrayExpress	B0BNA1.
Genevestigator	B0BNA1.
Family and domain databases
InterPro	IPR001452. SH3_domain. IPR007461. Ysc84_actin-binding. [Graphical view]
Pfam	PF04366. DUF500. 1 hit. PF00018. SH3_1. 1 hit. [Graphical view]
PRINTS	PR00452. SH3DOMAIN.
SMART	SM00326. SH3. 1 hit. [Graphical view]
SUPFAM	SSF50044. SH3. 1 hit.
PROSITE	PS50002. SH3. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	681005.

Entry information

Entry name

SH3Y1_RAT

Accession

Primary (citable) accession number: B0BNA1

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 10, 2008
Last sequence update:	February 26, 2008
Last modified:	April 3, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Chordata Protein Annotation Program