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B0B8K1

- RS4_CHLT2

UniProt

B0B8K1 - RS4_CHLT2

Protein

30S ribosomal protein S4

Gene

rpsD

Organism
Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (26 Feb 2008)
      Previous versions | rss
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    Functioni

    One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.UniRule annotation
    With S5 and S12 plays an important role in translational accuracy.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciCTRA471472:GJ9M-928-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S4UniRule annotation
    Gene namesi
    Name:rpsDUniRule annotation
    Ordered Locus Names:CTL0890
    OrganismiChlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
    Taxonomic identifieri471472 [NCBI]
    Taxonomic lineageiBacteriaChlamydiaeChlamydialesChlamydiaceaeChlamydia/Chlamydophila groupChlamydia
    ProteomesiUP000000795: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. small ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 20920930S ribosomal protein S4PRO_1000140706Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.UniRule annotation

    Protein-protein interaction databases

    STRINGi471472.CTL0890.

    Structurei

    3D structure databases

    ProteinModelPortaliB0B8K1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini93 – 15462S4 RNA-bindingUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the ribosomal protein S4P family.UniRule annotation
    Contains 1 S4 RNA-binding domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0522.
    HOGENOMiHOG000221003.
    KOiK02986.
    OMAiTCKLSRR.
    OrthoDBiEOG6N3CXM.

    Family and domain databases

    Gene3Di1.10.1050.10. 1 hit.
    3.10.290.10. 1 hit.
    HAMAPiMF_01306_B. Ribosomal_S4_B.
    InterProiIPR022801. Ribosomal_S4/S9.
    IPR001912. Ribosomal_S4/S9_N.
    IPR005709. Ribosomal_S4_bac-type.
    IPR002942. S4_RNA-bd.
    [Graphical view]
    PANTHERiPTHR11831. PTHR11831. 1 hit.
    PfamiPF00163. Ribosomal_S4. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view]
    SMARTiSM00363. S4. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR01017. rpsD_bact. 1 hit.
    PROSITEiPS50889. S4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B0B8K1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARYCGPKNR IARRFGANIF GRGRNPLLRK PNPPGQHGMQ RKKKSDYGLQ    50
    LEEKQKLKAC YGMILEKQLV KAYKEVVNKQ GNVAQMFLEK FECRLDSIVY 100
    RLGFAKTIFA AQQLVSHGHV LVNGKKVDRR SFFVRPGMQI SLKEKSKRLA 150
    IVTESLENKD QSSLPAYLSL DKAAFKGELV VAPELDQIAS QLPLPVNVSV 200
    ICEFLSHRT 209
    Length:209
    Mass (Da):23,660
    Last modified:February 26, 2008 - v1
    Checksum:iBA031FF685B1D797
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM884176 Genomic DNA. Translation: CAP04327.1.
    RefSeqiYP_001654959.1. NC_010287.1.

    Genome annotation databases

    EnsemblBacteriaiCAP04327; CAP04327; CTL0890.
    GeneIDi5858496.
    KEGGictb:CTL0890.
    PATRICi20377404. VBIChlTra32542_0955.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM884176 Genomic DNA. Translation: CAP04327.1 .
    RefSeqi YP_001654959.1. NC_010287.1.

    3D structure databases

    ProteinModelPortali B0B8K1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 471472.CTL0890.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAP04327 ; CAP04327 ; CTL0890 .
    GeneIDi 5858496.
    KEGGi ctb:CTL0890.
    PATRICi 20377404. VBIChlTra32542_0955.

    Phylogenomic databases

    eggNOGi COG0522.
    HOGENOMi HOG000221003.
    KOi K02986.
    OMAi TCKLSRR.
    OrthoDBi EOG6N3CXM.

    Enzyme and pathway databases

    BioCyci CTRA471472:GJ9M-928-MONOMER.

    Family and domain databases

    Gene3Di 1.10.1050.10. 1 hit.
    3.10.290.10. 1 hit.
    HAMAPi MF_01306_B. Ribosomal_S4_B.
    InterProi IPR022801. Ribosomal_S4/S9.
    IPR001912. Ribosomal_S4/S9_N.
    IPR005709. Ribosomal_S4_bac-type.
    IPR002942. S4_RNA-bd.
    [Graphical view ]
    PANTHERi PTHR11831. PTHR11831. 1 hit.
    Pfami PF00163. Ribosomal_S4. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view ]
    SMARTi SM00363. S4. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR01017. rpsD_bact. 1 hit.
    PROSITEi PS50889. S4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 434/Bu / ATCC VR-902B.

    Entry informationi

    Entry nameiRS4_CHLT2
    AccessioniPrimary (citable) accession number: B0B8K1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 14, 2009
    Last sequence update: February 26, 2008
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3