A9WSA3 (A9WSA3_RENSM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA-directed RNA polymerase subunit omega HAMAP-Rule MF_00366
Short name=RNAP omega subunit HAMAP-Rule MF_00366
EC=2.7.7.6 HAMAP-Rule MF_00366

Alternative name(s):
RNA polymerase omega subunit HAMAP-Rule MF_00366
Transcriptase subunit omega HAMAP-Rule MF_00366

Gene names

Name:	rpoZ HAMAP-Rule MF_00366
Ordered Locus Names:	RSal33209_1958

Organism

Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) [Complete proteome] [HAMAP] EMBL ABY23691.1

Taxonomic identifier

288705 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Micrococcaceae › Renibacterium › Renibacterium salmoninarum

Protein attributes

Sequence length	89 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits By similarity. HAMAP-Rule MF_00366 SAAS SAAS012293
Catalytic activity	Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). HAMAP-Rule MF_00366 SAAS SAAS012293
Subunit structure	The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription By similarity. HAMAP-Rule MF_00366 SAAS SAAS012293
Sequence similarities	Belongs to the RNA polymerase subunit omega family. HAMAP-Rule MF_00366

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase HAMAP-Rule MF_00366 EMBL ABY23691.1
Molecular function	Nucleotidyltransferase HAMAP-Rule MF_00366 SAAS SAAS012293 EMBL ABY23691.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: HAMAP
Cellular_component	RNA polymerase complex Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: HAMAP DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9WSA3 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 8A96CD8FB26B6A2F	FASTA	89	9,615
	10 20 30 40 50 60 MSNPAEGIIN PPIDSLLEAA DSKYGLVIFG AKRARQINAY YAQLHEGLFE YVGPLVDTKL 70 80 NEKSLSIALR EINEGMLVAK PVAVVDGAE

References

[1]

"Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental Arthrobacter ancestor." Wiens G.D., Rockey D.D., Wu Z., Chang J., Levy R., Crane S., Chen D.S., Capri G.R., Burnett J.R., Sudheesh P.S., Schipma M.J., Burd H., Bhattacharyya A., Rhodes L.D., Kaul R., Strom M.S. J. Bacteriol. 190:6970-6982(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000910 Genomic DNA. Translation: ABY23691.1.
RefSeq	YP_001625105.1. NC_010168.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	288705.RSal33209_1958.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABY23691; ABY23691; RSal33209_1958.
GeneID	5822666.
KEGG	rsa:RSal33209_1958.
PATRIC	23077255. VBIRenSal21953_2044.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1758.
HOGENOM	HOG000245723.
KO	K03060.
OMA	HEKPLSI.
ProtClustDB	PRK00392.
Enzyme and pathway databases
BioCyc	RSAL288705:GHX1-1958-MONOMER.
Family and domain databases
Gene3D	3.90.940.10. 1 hit.
HAMAP	MF_00366. RNApol_bact_RpoZ.
InterPro	IPR003716. DNA-dir_RNA_pol_omega. IPR006110. RNA_poly_omega/K/RPABC2. IPR012293. RNAP_RPB6_omega. [Graphical view]
SUPFAM	SSF63562. RNA_pol_omega. 1 hit.
TIGRFAMs	TIGR00690. rpoZ. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A9WSA3_RENSM

Accession

Primary (citable) accession number: A9WSA3

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)