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Protein
Submitted name:

16S rRNA m(5)C 967 methyltransferase

Gene

RSal33209_2352

Organism
Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotationImported, Transferase

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Enzyme and pathway databases

BioCyciRSAL288705:GHX1-2352-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
16S rRNA m(5)C 967 methyltransferaseImported (EC:2.1.1.-Imported)
Gene namesi
Ordered Locus Names:RSal33209_2352Imported
OrganismiRenibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)Imported
Taxonomic identifieri288705 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicrococcalesMicrococcaceaeRenibacterium
Proteomesi
  • UP000002007 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi288705.RSal33209_2352.

Structurei

3D structure databases

ProteinModelPortaliA9WR73.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini156 – 457302SAM_MT_RSMB_NOPInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037302.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiEOG6091D0.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9WR73-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVAFEVLRAV SKDNAYANLV LPARIRQNRL DKRDAGLATE LCYGALRGKG
60 70 80 90 100
TYDAIIASCV DRPLAEVDEA ILDALRLGSH QLLAMRIPPH AAVNQTVGLA
110 120 130 140 150
RAVIGAGPAS FINAVLRKIA AKDLAEWLDE LTAGVTDQVK VAAIRQAHPE
160 170 180 190 200
WIVRALRQSL VAHGRPVTEI DALLEADNAA PVVNLVALPG LGSPAEAFDA
210 220 230 240 250
DFTPGPLAVD SALSSGSDPG RLQSICEGIV RVQDVGSQLV ARALASAPVH
260 270 280 290 300
TKDSAAEKWL DLCAGPGGKA ALLAALAAQR GATLLANEPA EHRAELVRKA
310 320 330 340 350
LAAVPNTAWK VQVGDGRQIG TSQPETFDRI LIDAPCSGLG ALRRRPESRW
360 370 380 390 400
RRTPAEVAEL SQLQRELLTA GLEALKPGGV LAYATCSPHP AETIAVITDV
410 420 430 440 450
LRKRDDLALL DAGEVIDGVA LKPLDSAHPE PGLGKTSQLW PHLHATDAMF

LALISKKN
Length:458
Mass (Da):48,365
Last modified:February 5, 2008 - v1
Checksum:iA789FCDA0942D671
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000910 Genomic DNA. Translation: ABY24082.1.
RefSeqiWP_012245745.1. NC_010168.1.

Genome annotation databases

EnsemblBacteriaiABY24082; ABY24082; RSal33209_2352.
KEGGirsa:RSal33209_2352.
PATRICi23078071. VBIRenSal21953_2449.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000910 Genomic DNA. Translation: ABY24082.1.
RefSeqiWP_012245745.1. NC_010168.1.

3D structure databases

ProteinModelPortaliA9WR73.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi288705.RSal33209_2352.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABY24082; ABY24082; RSal33209_2352.
KEGGirsa:RSal33209_2352.
PATRICi23078071. VBIRenSal21953_2449.

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037302.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiEOG6091D0.

Enzyme and pathway databases

BioCyciRSAL288705:GHX1-2352-MONOMER.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental Arthrobacter ancestor."
    Wiens G.D., Rockey D.D., Wu Z., Chang J., Levy R., Crane S., Chen D.S., Capri G.R., Burnett J.R., Sudheesh P.S., Schipma M.J., Burd H., Bhattacharyya A., Rhodes L.D., Kaul R., Strom M.S.
    J. Bacteriol. 190:6970-6982(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235Imported.

Entry informationi

Entry nameiA9WR73_RENSM
AccessioniPrimary (citable) accession number: A9WR73
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: May 11, 2016
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.