A9VYR5 (A9VYR5_METEP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV, B subunit EMBL ABY31507.1
EC=5.99.1.3 EMBL ABY31507.1

Gene names

Ordered Locus Names:

Mext_3119

Organism

Methylobacterium extorquens (strain PA1) [Complete proteome] [HAMAP]

Taxonomic identifier

419610 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Methylobacteriaceae › Methylobacterium

Protein attributes

Sequence length	701 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU000380 SAAS SAAS002288 Nucleotide-binding
Molecular function	Isomerase Topoisomerase SAAS SAAS002288 RuleBase RU000380
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9VYR5 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 4D6DAA43024A36B4	FASTA	701	76,653
	10 20 30 40 50 60 MKSHAARLRP DSRSRRVSDP ARDLFGPGAK PPPAEAERRR RLTPVAPSPA PAPETAEAGY 70 80 90 100 110 120 DASAIEVLEG LEPVRRRPGM YIGGTDERAL HHLFAEVIDN SMDEAVAGHA SFIEVELEES 130 140 150 160 170 180 GSLVVTDNGR GIPVDPHPKF PGKSALEVIM TTLHAGGKFD SKVYETSGGL HGVGISVVNA 190 200 210 220 230 240 LSDVLEVEVA RNQTLYRQCF SRGHAQGSLE TIGRVQNRRG TRVRFHPDAQ IFGSLKFDPR 250 260 270 280 290 300 RLFKMARSKA YLFGGVEIRW RCAPALLEGL ADVPAEAVHR FPGGLSDYLA RDIEGKELVL 310 320 330 340 350 360 DSIFSGKITK PGSHGSLEWA VAWTVADDGV SHSYCNTIPT PEGGTHEAGL RVALLRALRE 370 380 390 400 410 420 HAERVNQAKR MTAVTTDDVM ATCASMLSVF IREPEFQGQT KDKLATVEAS RIVETAIRDA 430 440 450 460 470 480 FDHWLAASPA QANKLLDWVI DRAEERLRRR QEKEVARKSA TRKLRLPGKL ADCSAAGTVG 490 500 510 520 530 540 SEIFIVEGDS AGGSAKQARD RATQAVLPLR GKILNVASAS RDKLGANQLI SDLTLALGCG 550 560 570 580 590 600 TGANFREADL RYDRVIIMTD ADVDGAHIAS LLITFFYRQM PKLIDKGHLY LAIPPLYRIS 610 620 630 640 650 660 QGAKSAYARD DADKERIIKT VFKNGKVEIG RFKGLGEMMP AQLKETTMDP KKRTLLRVAI 670 680 690 700 LDEARESTGD TVERLMGNKP EARFAFITER ASFADGTELD I

References

[1]

"Complete sequence of Methylobacterium extorquens PA1." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Kim E., Marx C., Richardson P. Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PA1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000908 Genomic DNA. Translation: ABY31507.1.
RefSeq	YP_001640578.1. NC_010172.1.
3D structure databases
ProteinModelPortal	A9VYR5.
ModBase	Search...
Protein-protein interaction databases
STRING	A9VYR5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5835164.
GenomeReviews	Gene locus Mext_3119 in contig CP000908_GR.
KEGG	mex:Mext_3119.
PATRIC	22536822. VBIMetExt98426_3159.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG304889.
OMA	QARDKEF.
ProtClustDB	PRK05559.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. IPR006171. Toprim_domain. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. PF01751. Toprim. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A9VYR5_METEP

Accession

Primary (citable) accession number: A9VYR5

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	January 25, 2012
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)