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A9VXR1 (A9VXR1_METEP) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Pseudouridine synthase RuleBase RU003887
EC=5.4.99.- RuleBase RU003887
Gene names
Ordered Locus Names:Mext_3861
OrganismMethylobacterium extorquens (strain PA1) [Complete proteome] [HAMAP] EMBL ABY32233.1
Taxonomic identifier419610 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Methylobacteriaceae › Methylobacterium ›

Protein attributes

Sequence length669 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rsuA family. RuleBase RU003887

Contains 1 S4 RNA-binding domain. SAAS SAAS006145

Ontologies

Keywords
   LigandRNA-binding SAAS SAAS006145
   Molecular functionIsomerase SAAS SAAS006145 RuleBase RU003887
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpseudouridine synthesis

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

pseudouridine synthase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A9VXR1 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: DAB47C90C9FED804

FASTA66972,088
        10         20         30         40         50         60 
MTDIPDPSPA VPADQPAAPE GERIAKAIAR AGIASRRDAE ALIEAGRVTL NGKVLTSPAI 

        70         80         90        100        110        120 
NVTDADRITV DDEPLPARER TRLWLLHKPR GVVTTARDPE GRPTVFDGLP EELPRVVAIG 

       130        140        150        160        170        180 
RLDINTEGLL LLTNDGGLAK VIAHPDTGWL RRYRVRAFGD VTQPDLDKLK KGLTVDGMEY 

       190        200        210        220        230        240 
GPIEATLDRA QGDNVWLTLG LREGKNREVK RILEHLGLSV NRLIRLSFGP FQLGDLEVGL 

       250        260        270        280        290        300 
VEEIRTKVLK DQLGKNLAEQ AGVDFESPVR ETIAPFGSPK KATRATQAAP AGRGRQGARD 

       310        320        330        340        350        360 
EGASEARSGS RGGSAGRPPR DPARPAAPRA GARPAPRPPS PTVWRADEET RPRASKVPRR 

       370        380        390        400        410        420 
GMDPKTARAA AAERGRERVG AIQAAGERRV LVERLQPSPE KPAPEPHRRV RFRNEEERSA 

       430        440        450        460        470        480 
PRDRAREDRP RQDRPGQDRP REDRPRSEGP RENRARDERP GRDEFRRGAP AGDARPRRRE 

       490        500        510        520        530        540 
AGEAAPAERR GPPRERPSDF EGRPPRERSE GRPQRDFHGD SRERGEGAPR RERPSEGRPP 

       550        560        570        580        590        600 
ERRGPPRDRP RAAEGERPAR PPRGAEASDR PAFRKGPGKG PGGGAGKSFG GKPGFKGGDR 

       610        620        630        640        650        660 
DGARGDFKGG AKGGPRGDFK PGGGGRPGGR PGGRPGGKPG GAPGGRPGGG GKPAPRGGGR 


PSRPPRGEG

« Hide

References

[1]"Complete sequence of Methylobacterium extorquens PA1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Marx C., Richardson P.
Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PA1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000908 Genomic DNA. Translation: ABY32233.1.
RefSeqYP_001641304.1. NC_010172.1.

3D structure databases

ProteinModelPortalA9VXR1.
ModBaseSearch...

Protein-protein interaction databases

STRING419610.Mext_3861.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABY32233; ABY32233; Mext_3861.
GeneID5832771.
KEGGmex:Mext_3861.
PATRIC22538331. VBIMetExt98426_3907.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1187.
HOGENOMHOG000044954.
KOK06178.
OMAWGETDAR.
ProtClustDBCLSK2331862.

Enzyme and pathway databases

BioCycMEXT419610:GI32-3914-MONOMER.

Family and domain databases

Gene3D3.10.290.10. 1 hit.
InterProIPR020103. PsdUridine_synth_cat_dom.
IPR000748. PsdUridine_synth_RsuA/RluB/E/F.
IPR018496. PsdUridine_synth_RsuA/RluB_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMsTIGR00093. TIGR00093. 1 hit.
PROSITEPS01149. PSI_RSU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA9VXR1_METEP
AccessionPrimary (citable) accession number: A9VXR1
Entry history
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: May 1, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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