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Protein
Submitted name:

Predicted protein

Gene

PHYPADRAFT_196863

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. flavin adenine dinucleotide binding Source: InterPro
  2. oxidoreductase activity, acting on the CH-CH group of donors Source: InterPro

GO - Biological processi

  1. electron transport chain Source: InterPro
  2. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted proteinImported
Gene namesi
ORF Names:PHYPADRAFT_196863Imported
OrganismiPhyscomitrella patens subsp. patens (Moss)Imported
Taxonomic identifieri3218 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
ProteomesiUP000006727 Componenti: Partially assembled WGS sequence

PTM / Processingi

Proteomic databases

PRIDEiA9TP02.

Interactioni

Protein-protein interaction databases

STRINGi3218.JGI196863.

Structurei

3D structure databases

ProteinModelPortaliA9TP02.
SMRiA9TP02. Positions 40-631.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiA9TP02.
KOiK00234.
OMAiMQPLTVE.

Family and domain databases

Gene3Di1.20.58.100. 1 hit.
3.90.700.10. 1 hit.
InterProiIPR003953. FAD_bind_dom.
IPR003952. FRD_SDH_FAD_BS.
IPR015939. Fum_Rdtase/Succ_DH_flav-like_C.
IPR027477. Succ_DH/fumarate_Rdtase_cat.
IPR011281. Succ_DH_flav_su_fwd.
IPR014006. Succ_Dhase_FrdA_Gneg.
[Graphical view]
PfamiPF00890. FAD_binding_2. 1 hit.
PF02910. Succ_DH_flav_C. 1 hit.
[Graphical view]
SUPFAMiSSF46977. SSF46977. 1 hit.
SSF56425. SSF56425. 1 hit.
TIGRFAMsiTIGR01816. sdhA_forward. 1 hit.
TIGR01812. sdhA_frdA_Gneg. 1 hit.
PROSITEiPS00504. FRD_SDH_FAD_BINDING. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9TP02-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLRRVVESST KRLLRQRNGA LARSRSQQPK RGFAVDAKSY PIVDHTYDAI
60 70 80 90 100
VVGAGGAGLR AAIGLSETGF TTACITKLFP TRSHTVAAQG GINAALGNMT
110 120 130 140 150
EDDWRWHMYD TVKGSDWLGD QDAIQYMCRE APKAVIELEN YGLPFSRTED
160 170 180 190 200
GKIYQRAFGG QSLNFGKGGQ AYRCAAAADR TGHAMLHTLY GQAMKHNTQF
210 220 230 240 250
FVEYFALDLI MDEQGACRGV IALNMEDGTL HRFRAMNTIL ATGGYGRAYF
260 270 280 290 300
SATSAHTCTG DGNAMAARAG IPLQDLEFVQ FHPTGIYGAG CLITEGSRGE
310 320 330 340 350
GGILRNSEGE RFMERYAPTA KDLASRDVVS RSMTMEIREG RGVGPEKDHI
360 370 380 390 400
YLHLNHLPPE VLKERLPGIS ETAAIFAGVD VTKEPIPVLP TVHYNMGGIP
410 420 430 440 450
TNYHGEVLTK KGDDPDCMIP GLMAAGEAAC ASVHGANRLG ANSLLDIVIF
460 470 480 490 500
GRACANRVAE MFKPGQKQPE LPKDAGEKTI AWLDKLRYAN GDIPTANIRN
510 520 530 540 550
KMQRVMQNNA AVFRTQETLE EGCKLIDETV DSLSRVKTND RSLTWNTDLI
560 570 580 590 600
ETIELENLLI NASVTMHSAE ARKESRGAHA REDFTTRDDE KWMKHTLGYW
610 620 630
ENDRVRLDYR PVHMNTLDDE VETFPPKARV Y
Length:631
Mass (Da):69,687
Last modified:February 5, 2008 - v1
Checksum:iDDAEF954B32867BB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS545165 Genomic DNA. Translation: EDQ54899.1.
RefSeqiXP_001780340.1. XM_001780288.1.
UniGeneiPpa.7495.

Genome annotation databases

GeneIDi5943517.
KEGGippp:PHYPADRAFT_196863.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS545165 Genomic DNA. Translation: EDQ54899.1.
RefSeqiXP_001780340.1. XM_001780288.1.
UniGeneiPpa.7495.

3D structure databases

ProteinModelPortaliA9TP02.
SMRiA9TP02. Positions 40-631.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3218.JGI196863.

Proteomic databases

PRIDEiA9TP02.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi5943517.
KEGGippp:PHYPADRAFT_196863.

Phylogenomic databases

InParanoidiA9TP02.
KOiK00234.
OMAiMQPLTVE.

Family and domain databases

Gene3Di1.20.58.100. 1 hit.
3.90.700.10. 1 hit.
InterProiIPR003953. FAD_bind_dom.
IPR003952. FRD_SDH_FAD_BS.
IPR015939. Fum_Rdtase/Succ_DH_flav-like_C.
IPR027477. Succ_DH/fumarate_Rdtase_cat.
IPR011281. Succ_DH_flav_su_fwd.
IPR014006. Succ_Dhase_FrdA_Gneg.
[Graphical view]
PfamiPF00890. FAD_binding_2. 1 hit.
PF02910. Succ_DH_flav_C. 1 hit.
[Graphical view]
SUPFAMiSSF46977. SSF46977. 1 hit.
SSF56425. SSF56425. 1 hit.
TIGRFAMsiTIGR01816. sdhA_forward. 1 hit.
TIGR01812. sdhA_frdA_Gneg. 1 hit.
PROSITEiPS00504. FRD_SDH_FAD_BINDING. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
    Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
    , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
    Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Gransden 2004Imported.

Entry informationi

Entry nameiA9TP02_PHYPA
AccessioniPrimary (citable) accession number: A9TP02
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: January 7, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.