Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

A9TG22

- A9TG22_PHYPA

UniProt

A9TG22 - A9TG22_PHYPA

Protein

DNA ligase

Gene

PHYPADRAFT_221958

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (05 Feb 2008)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW
    4. double-strand break repair Source: EnsemblPlants/Gramene
    5. single strand break repair Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:PHYPADRAFT_221958Imported
    OrganismiPhyscomitrella patens subsp. patens (Moss)Imported
    Taxonomic identifieri3218 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
    ProteomesiUP000006727: Partially assembled WGS sequence

    Interactioni

    Protein-protein interaction databases

    STRINGi3218.JGI221958.

    Structurei

    3D structure databases

    ProteinModelPortaliA9TG22.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A9TG22-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEEKKVVAST AAEAVVLLTK KETDFDPEAA AFWKPGQPVP FLFLASALDI    50
    ISDESGRLAM TNILCNVFRT VIATTPKDLL AVVTLSANRI APAHEGVELG 100
    IGDAAIVRVL TEAYGRKADQ IKAQMKTLGD LGLVAKASRT SQRTMFKSQP 150
    LTCAKVLDTF REIAKDSGNQ SQDRKRGRMK ALLVAATECE PLYLVRLLQS 200
    KLRIGLAEKT VLAALAHAAV LSEVPRVPAN QLTARLEEAE EIMKETYSVL 250
    PIYEKIISAI LEHGIRKLPE VCNFTLGIPV GPMLAKPTTG VSEVLNKFQD 300
    MEFSCEYKYD GERAQVHYLQ GGTIEIYSRN AEHNTGKFPD IVAAMPRCMK 350
    TGTETYVLDC EVVAYDREKN KILPFQVLST RARKGVVLSD IKIQVCLFAF 400
    DLLYLNGRPL LKEQLNVRRE LLYSSFQEIP GEFQFATAKN SNDLEEIQKF 450
    LEDAINDSCE GLIVKTLSKD ATYEPAKRSN NWLKLKKDYM NTGGGDSLDL 500
    VPIGAFYGRG KRVGVYGAFL LACYDEDREE FQSICKIGTG FTEAVLEERS 550
    VTLKNHVIPQ PRSYYRYGET IGVDVWFEDV EVWEVKAADL SISPVHRAAV 600
    GLVDPNKGIS LRFPRLMRLR EDKTPVEATS AQQVAEMYRA QKINHGHGGD 650
    ADDDDD 656
    Length:656
    Mass (Da):72,907
    Last modified:February 5, 2008 - v1
    Checksum:iC5B853492DD5520E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS545112 Genomic DNA. Translation: EDQ57593.1.
    RefSeqiXP_001777550.1. XM_001777498.1.
    UniGeneiPpa.12544.

    Genome annotation databases

    GeneIDi5940783.
    KEGGippp:PHYPADRAFT_221958.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS545112 Genomic DNA. Translation: EDQ57593.1 .
    RefSeqi XP_001777550.1. XM_001777498.1.
    UniGenei Ppa.12544.

    3D structure databases

    ProteinModelPortali A9TG22.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3218.JGI221958.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 5940783.
    KEGGi ppp:PHYPADRAFT_221958.

    Phylogenomic databases

    KOi K10747.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
      Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
      , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
      Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Gransden 2004Imported.

    Entry informationi

    Entry nameiA9TG22_PHYPA
    AccessioniPrimary (citable) accession number: A9TG22
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 5, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3