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A9TG22

- A9TG22_PHYPA

UniProt

A9TG22 - A9TG22_PHYPA

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Protein

DNA ligase

Gene

PHYPADRAFT_221958

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:PHYPADRAFT_221958Imported
OrganismiPhyscomitrella patens subsp. patens (Moss)Imported
Taxonomic identifieri3218 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
ProteomesiUP000006727: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi3218.JGI221958.

Structurei

3D structure databases

ProteinModelPortaliA9TG22.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiA9TG22.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9TG22-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEEKKVVAST AAEAVVLLTK KETDFDPEAA AFWKPGQPVP FLFLASALDI
60 70 80 90 100
ISDESGRLAM TNILCNVFRT VIATTPKDLL AVVTLSANRI APAHEGVELG
110 120 130 140 150
IGDAAIVRVL TEAYGRKADQ IKAQMKTLGD LGLVAKASRT SQRTMFKSQP
160 170 180 190 200
LTCAKVLDTF REIAKDSGNQ SQDRKRGRMK ALLVAATECE PLYLVRLLQS
210 220 230 240 250
KLRIGLAEKT VLAALAHAAV LSEVPRVPAN QLTARLEEAE EIMKETYSVL
260 270 280 290 300
PIYEKIISAI LEHGIRKLPE VCNFTLGIPV GPMLAKPTTG VSEVLNKFQD
310 320 330 340 350
MEFSCEYKYD GERAQVHYLQ GGTIEIYSRN AEHNTGKFPD IVAAMPRCMK
360 370 380 390 400
TGTETYVLDC EVVAYDREKN KILPFQVLST RARKGVVLSD IKIQVCLFAF
410 420 430 440 450
DLLYLNGRPL LKEQLNVRRE LLYSSFQEIP GEFQFATAKN SNDLEEIQKF
460 470 480 490 500
LEDAINDSCE GLIVKTLSKD ATYEPAKRSN NWLKLKKDYM NTGGGDSLDL
510 520 530 540 550
VPIGAFYGRG KRVGVYGAFL LACYDEDREE FQSICKIGTG FTEAVLEERS
560 570 580 590 600
VTLKNHVIPQ PRSYYRYGET IGVDVWFEDV EVWEVKAADL SISPVHRAAV
610 620 630 640 650
GLVDPNKGIS LRFPRLMRLR EDKTPVEATS AQQVAEMYRA QKINHGHGGD

ADDDDD
Length:656
Mass (Da):72,907
Last modified:February 5, 2008 - v1
Checksum:iC5B853492DD5520E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS545112 Genomic DNA. Translation: EDQ57593.1.
RefSeqiXP_001777550.1. XM_001777498.1.
UniGeneiPpa.12544.

Genome annotation databases

GeneIDi5940783.
KEGGippp:PHYPADRAFT_221958.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS545112 Genomic DNA. Translation: EDQ57593.1 .
RefSeqi XP_001777550.1. XM_001777498.1.
UniGenei Ppa.12544.

3D structure databases

ProteinModelPortali A9TG22.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3218.JGI221958.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 5940783.
KEGGi ppp:PHYPADRAFT_221958.

Phylogenomic databases

InParanoidi A9TG22.
KOi K10747.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
    Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
    , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
    Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Gransden 2004Imported.

Entry informationi

Entry nameiA9TG22_PHYPA
AccessioniPrimary (citable) accession number: A9TG22
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: October 29, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3