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A9TG22

- A9TG22_PHYPA

UniProt

A9TG22 - A9TG22_PHYPA

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Protein

DNA ligase

Gene
PHYPADRAFT_221958
Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
  4. double-strand break repair Source: EnsemblPlants/Gramene
  5. single strand break repair Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:PHYPADRAFT_221958Imported
OrganismiPhyscomitrella patens subsp. patens (Moss)
Taxonomic identifieri3218 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
ProteomesiUP000006727: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi3218.JGI221958.

Structurei

3D structure databases

ProteinModelPortaliA9TG22.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9TG22-1 [UniParc]FASTAAdd to Basket

« Hide

MEEKKVVAST AAEAVVLLTK KETDFDPEAA AFWKPGQPVP FLFLASALDI    50
ISDESGRLAM TNILCNVFRT VIATTPKDLL AVVTLSANRI APAHEGVELG 100
IGDAAIVRVL TEAYGRKADQ IKAQMKTLGD LGLVAKASRT SQRTMFKSQP 150
LTCAKVLDTF REIAKDSGNQ SQDRKRGRMK ALLVAATECE PLYLVRLLQS 200
KLRIGLAEKT VLAALAHAAV LSEVPRVPAN QLTARLEEAE EIMKETYSVL 250
PIYEKIISAI LEHGIRKLPE VCNFTLGIPV GPMLAKPTTG VSEVLNKFQD 300
MEFSCEYKYD GERAQVHYLQ GGTIEIYSRN AEHNTGKFPD IVAAMPRCMK 350
TGTETYVLDC EVVAYDREKN KILPFQVLST RARKGVVLSD IKIQVCLFAF 400
DLLYLNGRPL LKEQLNVRRE LLYSSFQEIP GEFQFATAKN SNDLEEIQKF 450
LEDAINDSCE GLIVKTLSKD ATYEPAKRSN NWLKLKKDYM NTGGGDSLDL 500
VPIGAFYGRG KRVGVYGAFL LACYDEDREE FQSICKIGTG FTEAVLEERS 550
VTLKNHVIPQ PRSYYRYGET IGVDVWFEDV EVWEVKAADL SISPVHRAAV 600
GLVDPNKGIS LRFPRLMRLR EDKTPVEATS AQQVAEMYRA QKINHGHGGD 650
ADDDDD 656
Length:656
Mass (Da):72,907
Last modified:February 5, 2008 - v1
Checksum:iC5B853492DD5520E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS545112 Genomic DNA. Translation: EDQ57593.1.
RefSeqiXP_001777550.1. XM_001777498.1.
UniGeneiPpa.12544.

Genome annotation databases

GeneIDi5940783.
KEGGippp:PHYPADRAFT_221958.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS545112 Genomic DNA. Translation: EDQ57593.1 .
RefSeqi XP_001777550.1. XM_001777498.1.
UniGenei Ppa.12544.

3D structure databases

ProteinModelPortali A9TG22.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3218.JGI221958.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 5940783.
KEGGi ppp:PHYPADRAFT_221958.

Phylogenomic databases

KOi K10747.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
    Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
    , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
    Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Gransden 2004.

Entry informationi

Entry nameiA9TG22_PHYPA
AccessioniPrimary (citable) accession number: A9TG22
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: May 14, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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