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A9SNI6

- A9SNI6_PHYPA

UniProt

A9SNI6 - A9SNI6_PHYPA

Protein
Submitted name:

Predicted protein

Gene

PHYPADRAFT_132686

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 48 (01 Oct 2014)
      Sequence version 1 (05 Feb 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: InterPro
    2. GTP binding Source: InterPro
    3. nucleoside-triphosphatase activity Source: InterPro

    GO - Biological processi

    1. DNA repair Source: InterPro
    2. GTP catabolic process Source: InterPro
    3. SRP-dependent cotranslational protein targeting to membrane Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Predicted proteinImported
    Gene namesi
    ORF Names:PHYPADRAFT_132686Imported
    OrganismiPhyscomitrella patens subsp. patens (Moss)Imported
    Taxonomic identifieri3218 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
    ProteomesiUP000006727: Partially assembled WGS sequence

    Interactioni

    Protein-protein interaction databases

    STRINGi3218.JGI132686.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4AK9X-ray1.80A/B80-383[»]
    ProteinModelPortaliA9SNI6.
    SMRiA9SNI6. Positions 79-382.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK03110.

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    HAMAPiMF_00920. FtsY.
    InterProiIPR003593. AAA+_ATPase.
    IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
    IPR027417. P-loop_NTPase.
    IPR013822. Signal_recog_particl_SRP54_hlx.
    IPR004390. SR_rcpt_FtsY.
    IPR000897. SRP54_GTPase_dom.
    [Graphical view]
    PfamiPF00448. SRP54. 1 hit.
    PF02881. SRP54_N. 1 hit.
    [Graphical view]
    SMARTiSM00382. AAA. 1 hit.
    SM00278. HhH1. 1 hit.
    SM00962. SRP54. 1 hit.
    SM00963. SRP54_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF47364. SSF47364. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00064. ftsY. 1 hit.
    PROSITEiPS00300. SRP54. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A9SNI6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVNLSAPSGV VVQPPQLKHQ DWRSCSANAV RLVANAGSRQ WCSSPSSSGR    50
    RVFGVRCEGG QRVGFLGRLG RVIKEKAKSD IQLLFSGFSK TRENLAVVDE 100
    LLTYWNLDES ESILDELEEV LLVSDFGPKT ALKIVDTIRK DILAGRLKSG 150
    PQIKEALKKN IFKLLTERVT TTELQLGNSR PAVLMIVGVN GGGKTTTLGK 200
    LANRFKKEGV KVLMAAGDTF RAAAGEQLEV WAQRTGSEIV MAEGPKPRPA 250
    AVLSQAVRRA VEEDFDVVLC DTSGRLHTNY NLMEELRGCK RAVSKALSSA 300
    PNEVLLVLDG TTGLNMLAQA REFNQVIGVT GFILTKLDGT ARGGCVVSVV 350
    DELSIPVKFV GVGEGIDDLQ PFDAQSFVDA LFP 383
    Length:383
    Mass (Da):41,382
    Last modified:February 5, 2008 - v1
    Checksum:i25A89804FB7ECDB0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS544987 Genomic DNA. Translation: EDQ67200.1.
    RefSeqiXP_001767925.1. XM_001767873.1.
    UniGeneiPpa.1028.

    Genome annotation databases

    GeneIDi5931207.
    KEGGippp:PHYPADRAFT_132686.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS544987 Genomic DNA. Translation: EDQ67200.1 .
    RefSeqi XP_001767925.1. XM_001767873.1.
    UniGenei Ppa.1028.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4AK9 X-ray 1.80 A/B 80-383 [» ]
    ProteinModelPortali A9SNI6.
    SMRi A9SNI6. Positions 79-382.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3218.JGI132686.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 5931207.
    KEGGi ppp:PHYPADRAFT_132686.

    Phylogenomic databases

    KOi K03110.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    HAMAPi MF_00920. FtsY.
    InterProi IPR003593. AAA+_ATPase.
    IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
    IPR027417. P-loop_NTPase.
    IPR013822. Signal_recog_particl_SRP54_hlx.
    IPR004390. SR_rcpt_FtsY.
    IPR000897. SRP54_GTPase_dom.
    [Graphical view ]
    Pfami PF00448. SRP54. 1 hit.
    PF02881. SRP54_N. 1 hit.
    [Graphical view ]
    SMARTi SM00382. AAA. 1 hit.
    SM00278. HhH1. 1 hit.
    SM00962. SRP54. 1 hit.
    SM00963. SRP54_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47364. SSF47364. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00064. ftsY. 1 hit.
    PROSITEi PS00300. SRP54. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
      Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
      , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
      Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Gransden 2004Imported.
    2. "Evolution from the prokaryotic to the higher plant chloroplast signal recognition particle: the signal recognition particle RNA is conserved in plastids of a wide range of photosynthetic organisms."
      Trager C., Rosenblad M.A., Ziehe D., Garcia-Petit C., Schrader L., Kock K., Richter C.V., Klinkert B., Narberhaus F., Herrmann C., Hofmann E., Aronsson H., Schunemann D.
      Plant Cell 24:4819-4836(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 80-383.

    Entry informationi

    Entry nameiA9SNI6_PHYPA
    AccessioniPrimary (citable) accession number: A9SNI6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 5, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3