A9SNI6 (A9SNI6_PHYPA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EDQ67200.1

Gene names

ORF Names:

PHYPADRAFT_132686 EMBL EDQ67200.1

Organism

Physcomitrella patens subsp. patens (Moss) [Reference proteome]

Taxonomic identifier

145481 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Bryophyta › Bryophytina › Bryopsida › Funariidae › Funariales › Funariaceae › Physcomitrella › Physcomitrella patens

Protein attributes

Sequence length	383 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 4AK9 Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: InterPro GTP catabolic process Inferred from electronic annotation. Source: InterPro SRP-dependent cotranslational protein targeting to membrane Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro GTP binding Inferred from electronic annotation. Source: InterPro nucleoside-triphosphatase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A9SNI6 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 25A89804FB7ECDB0	FASTA	383	41,382
	10 20 30 40 50 60 MVNLSAPSGV VVQPPQLKHQ DWRSCSANAV RLVANAGSRQ WCSSPSSSGR RVFGVRCEGG 70 80 90 100 110 120 QRVGFLGRLG RVIKEKAKSD IQLLFSGFSK TRENLAVVDE LLTYWNLDES ESILDELEEV 130 140 150 160 170 180 LLVSDFGPKT ALKIVDTIRK DILAGRLKSG PQIKEALKKN IFKLLTERVT TTELQLGNSR 190 200 210 220 230 240 PAVLMIVGVN GGGKTTTLGK LANRFKKEGV KVLMAAGDTF RAAAGEQLEV WAQRTGSEIV 250 260 270 280 290 300 MAEGPKPRPA AVLSQAVRRA VEEDFDVVLC DTSGRLHTNY NLMEELRGCK RAVSKALSSA 310 320 330 340 350 360 PNEVLLVLDG TTGLNMLAQA REFNQVIGVT GFILTKLDGT ARGGCVVSVV DELSIPVKFV 370 380 GVGEGIDDLQ PFDAQSFVDA LFP

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants." Rensing S., Lang D., Zimmer A., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y. , Hashimoto A., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J., Bezanilla M., Blankenship R., Cho S.H., Dutcher S., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hugh J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A., Hasebe M., Lucas S., Mishler D.B., Reski R., Grigoriev I., Quatrano R.S., Boore J.L. Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Gransden 2004.
[2]	"Evolution from the prokaryotic to the higher plant chloroplast signal recognition particle: the signal recognition particle RNA is conserved in plastids of a wide range of photosynthetic organisms." Trager C., Rosenblad M.A., Ziehe D., Garcia-Petit C., Schrader L., Kock K., Richter C.V., Klinkert B., Narberhaus F., Herrmann C., Hofmann E., Aronsson H., Schunemann D. Plant Cell 24:4819-4836(2012) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 80-383.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

DS544987 Genomic DNA. Translation: EDQ67200.1.

RefSeq

XP_001767925.1. XM_001767873.1.

UniGene

Ppa.1028.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4AK9	X-ray	1.80	A/B	80-383	[»]

ProteinModelPortal

A9SNI6.

SMR

A9SNI6. Positions 79-382.

ModBase

Search...

Protein-protein interaction databases

STRING

3218.JGI132686.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

5931207.

KEGG

ppp:PHYPADRAFT_132686.

Phylogenomic databases

KO

K03110.

ProtClustDB

CLSN2688951.

Family and domain databases

InterPro

IPR003593. AAA+_ATPase.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR027417. P-loop_NTPase.
IPR013822. Signal_recog_particl_SRP54_hlx.
IPR004390. SR_rcpt_FtsY.
IPR000897. SRP54_GTPase_dom.
[Graphical view]

Pfam

PF00448. SRP54. 1 hit.
PF02881. SRP54_N. 1 hit.
[Graphical view]

SMART

SM00382. AAA. 1 hit.
SM00278. HhH1. 1 hit.
SM00962. SRP54. 1 hit.
SM00963. SRP54_N. 1 hit.
[Graphical view]

SUPFAM

SSF47364. SRP54. 1 hit.
SSF52540. SSF52540. 1 hit.

TIGRFAMs

TIGR00064. ftsY. 1 hit.

PROSITE

PS00300. SRP54. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

A9SNI6_PHYPA

Accession

Primary (citable) accession number: A9SNI6

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	May 29, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)