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A9SDK9

- A9SDK9_PHYPA

UniProt

A9SDK9 - A9SDK9_PHYPA

Protein

Glutamate decarboxylase

Gene

PHYPADRAFT_127975

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (05 Feb 2008)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

    Cofactori

    Pyridoxal phosphate.UniRule annotation

    GO - Molecular functioni

    1. glutamate decarboxylase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. glutamate metabolic process Source: InterPro

    Keywords - Molecular functioni

    DecarboxylaseUniRule annotation, Lyase

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
    Gene namesi
    ORF Names:PHYPADRAFT_127975Imported
    OrganismiPhyscomitrella patens subsp. patens (Moss)Imported
    Taxonomic identifieri3218 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
    ProteomesiUP000006727: Partially assembled WGS sequence

    Interactioni

    Protein-protein interaction databases

    STRINGi3218.JGI127975.

    Structurei

    3D structure databases

    ProteinModelPortaliA9SDK9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the group II decarboxylase family.UniRule annotation

    Phylogenomic databases

    KOiK01580.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    InterProiIPR010107. Glutamate_decarboxylase.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    [Graphical view]
    PfamiPF00282. Pyridoxal_deC. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.
    TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A9SDK9-1 [UniParc]FASTAAdd to Basket

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    MKETRGHNTI DSMFASRYVQ CELPKFTIPE RATPKDAAYQ IISDELMLDG    50
    NPRLNLASFV TTWMEPECDK LIMSALNKNY IDMDEYPITT ELQDRCVNMV 100
    ARLFNAPIEE GEQAIGAGTV GSSEAIMLAG LAFKRKWQNE RKAAGKPWDK 150
    PNLVTGANVQ VCWEKFARYF EVELREVKLK EDYYVMDPYK AVELVDENTI 200
    CVCAILGSTY NGEFEDVQLL NDLLEEKNRE KGLHVPIHVD AASGGFIAPF 250
    LYPDIVWDFR LPLVKSINVS GHKYGLVYAG IGWVVWRSKE DLPEELVFHV 300
    NYLGADQPTF TLNFSKGASQ VIAQYYQLIR LGFEGYKNIM ANCAMNAKIL 350
    TKAIESTGRF KILSKEVGVP VVAFSLLDNS DHNEYEISHQ LRHYGWTVPA 400
    YTMAADAQHV TLLRVVVRED FSRSLSDRLL TDIKRVLAYF DARPSKLIEA 450
    VTAAVVEENK EQHLEMPTTP DAVKATQAFN TVILEHVACK KKHNGHHHSR 500
    SRGGHGKKHA SPKANGVC 518
    Length:518
    Mass (Da):58,395
    Last modified:February 5, 2008 - v1
    Checksum:i2C3D4FC5C6E5A446
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS544957 Genomic DNA. Translation: EDQ70761.1.
    RefSeqiXP_001764494.1. XM_001764442.1.
    UniGeneiPpa.5625.

    Genome annotation databases

    GeneIDi5927597.
    KEGGippp:PHYPADRAFT_127975.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS544957 Genomic DNA. Translation: EDQ70761.1 .
    RefSeqi XP_001764494.1. XM_001764442.1.
    UniGenei Ppa.5625.

    3D structure databases

    ProteinModelPortali A9SDK9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3218.JGI127975.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 5927597.
    KEGGi ppp:PHYPADRAFT_127975.

    Phylogenomic databases

    KOi K01580.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    InterProi IPR010107. Glutamate_decarboxylase.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    [Graphical view ]
    Pfami PF00282. Pyridoxal_deC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
      Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
      , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
      Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Gransden 2004Imported.

    Entry informationi

    Entry nameiA9SDK9_PHYPA
    AccessioniPrimary (citable) accession number: A9SDK9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 5, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3