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Protein

Glutamate decarboxylase

Gene

PHYPADRAFT_127975

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. glutamate decarboxylase activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glutamate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
ORF Names:PHYPADRAFT_127975Imported
OrganismiPhyscomitrella patens subsp. patens (Moss)Imported
Taxonomic identifieri3218 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
ProteomesiUP000006727 Componenti: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi3218.JGI127975.

Structurei

3D structure databases

ProteinModelPortaliA9SDK9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

InParanoidiA9SDK9.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

A9SDK9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKETRGHNTI DSMFASRYVQ CELPKFTIPE RATPKDAAYQ IISDELMLDG
60 70 80 90 100
NPRLNLASFV TTWMEPECDK LIMSALNKNY IDMDEYPITT ELQDRCVNMV
110 120 130 140 150
ARLFNAPIEE GEQAIGAGTV GSSEAIMLAG LAFKRKWQNE RKAAGKPWDK
160 170 180 190 200
PNLVTGANVQ VCWEKFARYF EVELREVKLK EDYYVMDPYK AVELVDENTI
210 220 230 240 250
CVCAILGSTY NGEFEDVQLL NDLLEEKNRE KGLHVPIHVD AASGGFIAPF
260 270 280 290 300
LYPDIVWDFR LPLVKSINVS GHKYGLVYAG IGWVVWRSKE DLPEELVFHV
310 320 330 340 350
NYLGADQPTF TLNFSKGASQ VIAQYYQLIR LGFEGYKNIM ANCAMNAKIL
360 370 380 390 400
TKAIESTGRF KILSKEVGVP VVAFSLLDNS DHNEYEISHQ LRHYGWTVPA
410 420 430 440 450
YTMAADAQHV TLLRVVVRED FSRSLSDRLL TDIKRVLAYF DARPSKLIEA
460 470 480 490 500
VTAAVVEENK EQHLEMPTTP DAVKATQAFN TVILEHVACK KKHNGHHHSR
510
SRGGHGKKHA SPKANGVC
Length:518
Mass (Da):58,395
Last modified:February 5, 2008 - v1
Checksum:i2C3D4FC5C6E5A446
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS544957 Genomic DNA. Translation: EDQ70761.1.
RefSeqiXP_001764494.1. XM_001764442.1.
UniGeneiPpa.5625.

Genome annotation databases

GeneIDi5927597.
KEGGippp:PHYPADRAFT_127975.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS544957 Genomic DNA. Translation: EDQ70761.1.
RefSeqiXP_001764494.1. XM_001764442.1.
UniGeneiPpa.5625.

3D structure databases

ProteinModelPortaliA9SDK9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3218.JGI127975.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi5927597.
KEGGippp:PHYPADRAFT_127975.

Phylogenomic databases

InParanoidiA9SDK9.
KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
    Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
    , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
    Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Gransden 2004Imported.

Entry informationi

Entry nameiA9SDK9_PHYPA
AccessioniPrimary (citable) accession number: A9SDK9
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: February 4, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.