A9RI73 (A9RI73_PHYPA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EDQ81509.1

Gene names

ORF Names:

PHYPADRAFT_50856 EMBL EDQ81509.1

Organism

Physcomitrella patens subsp. patens (Moss) [Reference proteome]

Taxonomic identifier

145481 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Bryophyta › Bryophytina › Bryopsida › Funariidae › Funariales › Funariaceae › Physcomitrella › Physcomitrella patens

Protein attributes

Sequence length	455 AA.
Sequence status	Fragment.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	glutamate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glutamate decarboxylase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	455	1	EMBL EDQ81509.1

Sequences

	Sequence		Length	Mass (Da)
	A9RI73 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: 18D568A2F2FEEBA8	FASTA	455	51,362
	10 20 30 40 50 60 MVLTQSRSMK DSNTHTIDSM FATRYVQAPL PRWRLPDNET PKDAASQVIN DELMLDGNPR 70 80 90 100 110 120 LNLASFVTTW MEPECDKLIQ KSLNKNYIDM DEYPITTEIQ DRCVNMIAHL FKAPLDDGQP 130 140 150 160 170 180 AVGAGTVGSS EAIMLAGLAF KRKWQLQRRA AGLPCDKPNM VTGANVQVCW EKFANYFEVE 190 200 210 220 230 240 IRAVKLREDY YVMDPAKAVE MCDENTICVC AILGSTYNGE FEDVATLNNL LEKKNKENGW 250 260 270 280 290 300 NIPIHVDAAS GGFVAPFMYP DLVWDFRLPL VKSINVSGHK YGLVYAGIGW VVWRSKEDLP 310 320 330 340 350 360 EELVFHVNYL GADQPTFTLN FSKGASHVIA QYYQFIRLGF EGYKKINMNC AENAKFLADG 370 380 390 400 410 420 IVATGRFKLL SKPVGVPLIA FSLTDRSRFD EYDIADGLRR YGWTVPAYTM APDAQQITLL 430 440 450 RVVVREDFSR SLADRLMTDL KRTLETLDSQ PPKLV

References

[1]

"The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants." Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y. , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L. Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Gransden 2004.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DS544899 Genomic DNA. Translation: EDQ81509.1.
RefSeq	XP_001753757.1. XM_001753705.1.
UniGene	Ppa.15263.
3D structure databases
ProteinModelPortal	A9RI73.
ModBase	Search...
Protein-protein interaction databases
STRING	3218.JGI50856.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5916876.
KEGG	ppp:PHYPADRAFT_50856.
Phylogenomic databases
KO	K01580.
ProtClustDB	CLSN2683665.
Family and domain databases
Gene3D	3.40.640.10. 1 hit.
InterPro	IPR010107. Glutamate_decarboxylase. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
PANTHER	PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A9RI73_PHYPA

Accession

Primary (citable) accession number: A9RI73

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)