Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Glutamate decarboxylase

Gene

PHYPADRAFT_174716

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
ORF Names:PHYPADRAFT_174716Imported
OrganismiPhyscomitrella patens subsp. patens (Moss)Imported
Taxonomic identifieri3218 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
ProteomesiUP000006727 Componenti: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi3218.PP1S8_163V6.1.

Structurei

3D structure databases

ProteinModelPortaliA9RGP7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

InParanoidiA9RGP7.
KOiK01580.
OMAiAKNIDCP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

A9RGP7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLSELKGMK EVDSSNVDSI YASRYVQNEL PRWSLPEREF PKDAAYQVIA
60 70 80 90 100
DELMLDGNPR LNFASFVTTW MEPECDKLML GALSKNYIDM DEYPITTELQ
110 120 130 140 150
DRCVNMIARL FNASLEEGQT AIGAGTVGSS EAIMLAGLAF KRKWQLERKA
160 170 180 190 200
KGLPFDKPNM VTGANVHVVW EKFANYFEVE LRAVKLREDY YVMDPAKAVE
210 220 230 240 250
MCDENTICVS AILGSTYNGE FEDVETLNNL LEKKNKEKGW HIPIHVDAAS
260 270 280 290 300
GGFVAPFLYP DLVWDFRLPL VKSINVSGHK YGLVYPGVGW VVWRSKEDLP
310 320 330 340 350
EELIFHVNYL GADQPTFTLN FSKGASQIIA QYYQFIRLGF EGYSKIIANC
360 370 380 390 400
AKNAKTLAES IVATGRFKLL SKPQGVPLVA FSLKDKRKFD EFDIADGLRR
410 420 430 440 450
HGWTVSAYTM APDAQQTTLL RVVVREDFSR GLSDRLVEDL KKVLKTLDSQ
460 470 480 490 500
PAKLVQAVAE VIQEQHHELA NSNATVEDIK QTVEHDVPFH EMVKKLSDAH
510 520
NHRKKAQAHK LHSIHKTNGV C
Length:521
Mass (Da):58,825
Last modified:February 5, 2008 - v1
Checksum:iE573EFEFF6988BAC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS544897 Genomic DNA. Translation: EDQ81944.1.
RefSeqiXP_001753315.1. XM_001753263.1.
UniGeneiPpa.14345.

Genome annotation databases

GeneIDi5916425.
KEGGippp:PHYPADRAFT_174716.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS544897 Genomic DNA. Translation: EDQ81944.1.
RefSeqiXP_001753315.1. XM_001753263.1.
UniGeneiPpa.14345.

3D structure databases

ProteinModelPortaliA9RGP7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3218.PP1S8_163V6.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi5916425.
KEGGippp:PHYPADRAFT_174716.

Phylogenomic databases

InParanoidiA9RGP7.
KOiK01580.
OMAiAKNIDCP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
    Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
    , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
    Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Gransden 2004Imported.

Entry informationi

Entry nameiA9RGP7_PHYPA
AccessioniPrimary (citable) accession number: A9RGP7
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: July 22, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.