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A9RFM4

- A9RFM4_PHYPA

UniProt

A9RFM4 - A9RFM4_PHYPA

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Protein
Submitted name:

Predicted protein

Gene

PHYPADRAFT_113303

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. carbon-sulfur lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted proteinImported
Gene namesi
ORF Names:PHYPADRAFT_113303Imported
OrganismiPhyscomitrella patens subsp. patens (Moss)Imported
Taxonomic identifieri3218 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
ProteomesiUP000006727: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi3218.JGI113303.

Structurei

3D structure databases

ProteinModelPortaliA9RFM4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiA9RFM4.
KOiK16903.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR006948. Alliinase_C.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF04864. Alliinase_C. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Fragment.

A9RFM4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
GDPTMFEAYW NAHKDDHVKV GYANDTLSYF VKSKEQEGCP WFVSALLDDA
60 70 80 90 100
IRELHSFVGN AVTGDRAIVV GNGSTQLFQA ALYALATRDG TSTPVVSEAP
110 120 130 140 150
FYSAYREIID YLQSKLFHWA GDSKTFHPKA NETFIEMVTT PNNPCGTMRE
160 170 180 190 200
GLGLGDKGTI VHDLAYYWPT YVPIISSFDS DVMLFTLSKC TGHAGLRIGW
210 220 230 240 250
AVVKNPAVAK KMAEFVALNT IGLAQDAQSR AAGLIRTIRI TEALLAKKFF
260 270 280 290 300
HWSRQVMESR WVKVRSALAG NKNFSLQNNV ASATHTFSTC TFSGTSHSTY
310 320 330 340 350
PAFIWLKCEK EGTDCQMILK RNGILGRNGA LFGVSTQYAR LSLLDHEPAV
360
DLLVERLTTL EC
Length:362
Mass (Da):40,032
Last modified:February 5, 2008 - v1
Checksum:iD9F532A96CA52BD6
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS544895 Genomic DNA. Translation: EDQ82320.1.
RefSeqiXP_001752816.1. XM_001752764.1.

Genome annotation databases

GeneIDi5916146.
KEGGippp:PHYPADRAFT_113303.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS544895 Genomic DNA. Translation: EDQ82320.1 .
RefSeqi XP_001752816.1. XM_001752764.1.

3D structure databases

ProteinModelPortali A9RFM4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3218.JGI113303.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 5916146.
KEGGi ppp:PHYPADRAFT_113303.

Phylogenomic databases

InParanoidi A9RFM4.
KOi K16903.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProi IPR006948. Alliinase_C.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view ]
Pfami PF04864. Alliinase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
    Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
    , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
    Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Gransden 2004Imported.

Entry informationi

Entry nameiA9RFM4_PHYPA
AccessioniPrimary (citable) accession number: A9RFM4
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: October 29, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3