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A9RDM6

- A9RDM6_PHYPA

UniProt

A9RDM6 - A9RDM6_PHYPA

Protein
Submitted name:

Predicted protein

Gene

PHYPADRAFT_112298

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 31 (01 Oct 2014)
      Sequence version 1 (05 Feb 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. carbon-sulfur lyase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Predicted proteinImported
    Gene namesi
    ORF Names:PHYPADRAFT_112298Imported
    OrganismiPhyscomitrella patens subsp. patens (Moss)Imported
    Taxonomic identifieri3218 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
    ProteomesiUP000006727: Partially assembled WGS sequence

    Interactioni

    Protein-protein interaction databases

    STRINGi3218.JGI112298.

    Structurei

    3D structure databases

    ProteinModelPortaliA9RDM6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK16903.

    Family and domain databases

    Gene3Di2.10.25.30. 1 hit.
    3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProiIPR006948. Alliinase_C.
    IPR006947. EGF_alliinase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view]
    PfamiPF04864. Alliinase_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.

    Sequencei

    Sequence statusi: Fragment.

    A9RDM6-1 [UniParc]FASTAAdd to Basket

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    LCSGDPTMFE EFWFRHEVSS ITVILGYQRM SYFAQSKHVW FMENELELQI    50
    RALHEVVGNA VTEGRHIVVG TGSTQLFQAT LYALTSPDQP KPTNIVSAAP 100
    FYSSYPAVTD YLRSALFKWV GDAAKFSLGV EREEPYIEMV CSPNNPDGRI 150
    QHAIVNGTGH VVHDLAYYWP HYTPITEAAD HDIMLFTLSK STGHAGTRIG 200
    WAILKDEKVA KKMMKFVELN TIGVSHDSQV RATQIVKSVV QGYAYSSANN 250
    NKLFHFGASV MHYRWRRLRD SLSGSSEFSI PEFQPSYCNF FQKQVNHAPA 300
    FAWLRCRKVV DCEAFLKENR IISRSGRHFG VGTEYVRLSM LERNQKFEML 350
    LSRLARIDSS RTPD 364
    Length:364
    Mass (Da):41,453
    Last modified:February 5, 2008 - v1
    Checksum:i341EAB09D252DDEE
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS544892 Genomic DNA. Translation: EDQ82890.1.
    RefSeqiXP_001752157.1. XM_001752105.1.

    Genome annotation databases

    GeneIDi5915556.
    KEGGippp:PHYPADRAFT_112298.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS544892 Genomic DNA. Translation: EDQ82890.1 .
    RefSeqi XP_001752157.1. XM_001752105.1.

    3D structure databases

    ProteinModelPortali A9RDM6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3218.JGI112298.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 5915556.
    KEGGi ppp:PHYPADRAFT_112298.

    Phylogenomic databases

    KOi K16903.

    Family and domain databases

    Gene3Di 2.10.25.30. 1 hit.
    3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProi IPR006948. Alliinase_C.
    IPR006947. EGF_alliinase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view ]
    Pfami PF04864. Alliinase_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
      Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
      , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
      Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Gransden 2004Imported.

    Entry informationi

    Entry nameiA9RDM6_PHYPA
    AccessioniPrimary (citable) accession number: A9RDM6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 5, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3