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A9RDM6

- A9RDM6_PHYPA

UniProt

A9RDM6 - A9RDM6_PHYPA

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Protein
Submitted name:

Predicted protein

Gene

PHYPADRAFT_112298

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. carbon-sulfur lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted proteinImported
Gene namesi
ORF Names:PHYPADRAFT_112298Imported
OrganismiPhyscomitrella patens subsp. patens (Moss)Imported
Taxonomic identifieri3218 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
ProteomesiUP000006727: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi3218.JGI112298.

Structurei

3D structure databases

ProteinModelPortaliA9RDM6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiA9RDM6.
KOiK16903.

Family and domain databases

Gene3Di2.10.25.30. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR006948. Alliinase_C.
IPR006947. EGF_alliinase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF04864. Alliinase_C. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Fragment.

A9RDM6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
LCSGDPTMFE EFWFRHEVSS ITVILGYQRM SYFAQSKHVW FMENELELQI
60 70 80 90 100
RALHEVVGNA VTEGRHIVVG TGSTQLFQAT LYALTSPDQP KPTNIVSAAP
110 120 130 140 150
FYSSYPAVTD YLRSALFKWV GDAAKFSLGV EREEPYIEMV CSPNNPDGRI
160 170 180 190 200
QHAIVNGTGH VVHDLAYYWP HYTPITEAAD HDIMLFTLSK STGHAGTRIG
210 220 230 240 250
WAILKDEKVA KKMMKFVELN TIGVSHDSQV RATQIVKSVV QGYAYSSANN
260 270 280 290 300
NKLFHFGASV MHYRWRRLRD SLSGSSEFSI PEFQPSYCNF FQKQVNHAPA
310 320 330 340 350
FAWLRCRKVV DCEAFLKENR IISRSGRHFG VGTEYVRLSM LERNQKFEML
360
LSRLARIDSS RTPD
Length:364
Mass (Da):41,453
Last modified:February 5, 2008 - v1
Checksum:i341EAB09D252DDEE
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS544892 Genomic DNA. Translation: EDQ82890.1.
RefSeqiXP_001752157.1. XM_001752105.1.

Genome annotation databases

GeneIDi5915556.
KEGGippp:PHYPADRAFT_112298.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS544892 Genomic DNA. Translation: EDQ82890.1 .
RefSeqi XP_001752157.1. XM_001752105.1.

3D structure databases

ProteinModelPortali A9RDM6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3218.JGI112298.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 5915556.
KEGGi ppp:PHYPADRAFT_112298.

Phylogenomic databases

InParanoidi A9RDM6.
KOi K16903.

Family and domain databases

Gene3Di 2.10.25.30. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProi IPR006948. Alliinase_C.
IPR006947. EGF_alliinase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view ]
Pfami PF04864. Alliinase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
    Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
    , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
    Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Gransden 2004Imported.

Entry informationi

Entry nameiA9RDM6_PHYPA
AccessioniPrimary (citable) accession number: A9RDM6
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: October 29, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3