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A9RDM6

- A9RDM6_PHYPA

UniProt

A9RDM6 - A9RDM6_PHYPA

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Protein
Submitted name: Predicted protein
Gene
PHYPADRAFT_112298
Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. carbon-sulfur lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted proteinImported
Gene namesi
ORF Names:PHYPADRAFT_112298Imported
OrganismiPhyscomitrella patens subsp. patens (Moss)
Taxonomic identifieri3218 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
ProteomesiUP000006727: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi3218.JGI112298.

Structurei

3D structure databases

ProteinModelPortaliA9RDM6.

Family & Domainsi

Phylogenomic databases

KOiK16903.

Family and domain databases

Gene3Di2.10.25.30. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR006948. Alliinase_C.
IPR006947. EGF_alliinase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF04864. Alliinase_C. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Fragment.

A9RDM6-1 [UniParc]FASTAAdd to Basket

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LCSGDPTMFE EFWFRHEVSS ITVILGYQRM SYFAQSKHVW FMENELELQI    50
RALHEVVGNA VTEGRHIVVG TGSTQLFQAT LYALTSPDQP KPTNIVSAAP 100
FYSSYPAVTD YLRSALFKWV GDAAKFSLGV EREEPYIEMV CSPNNPDGRI 150
QHAIVNGTGH VVHDLAYYWP HYTPITEAAD HDIMLFTLSK STGHAGTRIG 200
WAILKDEKVA KKMMKFVELN TIGVSHDSQV RATQIVKSVV QGYAYSSANN 250
NKLFHFGASV MHYRWRRLRD SLSGSSEFSI PEFQPSYCNF FQKQVNHAPA 300
FAWLRCRKVV DCEAFLKENR IISRSGRHFG VGTEYVRLSM LERNQKFEML 350
LSRLARIDSS RTPD 364
Length:364
Mass (Da):41,453
Last modified:February 5, 2008 - v1
Checksum:i341EAB09D252DDEE
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS544892 Genomic DNA. Translation: EDQ82890.1.
RefSeqiXP_001752157.1. XM_001752105.1.

Genome annotation databases

GeneIDi5915556.
KEGGippp:PHYPADRAFT_112298.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS544892 Genomic DNA. Translation: EDQ82890.1 .
RefSeqi XP_001752157.1. XM_001752105.1.

3D structure databases

ProteinModelPortali A9RDM6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3218.JGI112298.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 5915556.
KEGGi ppp:PHYPADRAFT_112298.

Phylogenomic databases

KOi K16903.

Family and domain databases

Gene3Di 2.10.25.30. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProi IPR006948. Alliinase_C.
IPR006947. EGF_alliinase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view ]
Pfami PF04864. Alliinase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants."
    Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y., Tanahashi T., Sakakibara K., Fujita T., Oishi K., Shin-I T., Kuroki Y., Toyoda A., Suzuki Y.
    , Hashimoto S.-I., Yamaguchi K., Sugano A., Kohara Y., Fujiyama A., Anterola A., Aoki S., Ashton N., Barbazuk W.B., Barker E., Bennetzen J.L., Blankenship R., Cho S.H., Dutcher S.K., Estelle M., Fawcett J.A., Gundlach H., Hanada K., Heyl A., Hicks K.A., Hughes J., Lohr M., Mayer K., Melkozernov A., Murata T., Nelson D.R., Pils B., Prigge M., Reiss B., Renner T., Rombauts S., Rushton P.J., Sanderfoot A., Schween G., Shiu S.-H., Stueber K., Theodoulou F.L., Tu H., Van de Peer Y., Verrier P.J., Waters E., Wood A., Yang L., Cove D., Cuming A.C., Hasebe M., Lucas S., Mishler B.D., Reski R., Grigoriev I.V., Quatrano R.S., Boore J.L.
    Science 319:64-69(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Gransden 2004.

Entry informationi

Entry nameiA9RDM6_PHYPA
AccessioniPrimary (citable) accession number: A9RDM6
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: May 14, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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