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Protein

Superoxide dismutase

Gene

sodA

Organism
Yersinia pestis bv. Antiqua (strain Angola)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Enzyme and pathway databases

BioCyciYPES349746:GHPB-3783-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodAImported
Ordered Locus Names:YpAngola_A3773Imported
ORF Names:CH56_469Imported
OrganismiYersinia pestis bv. Antiqua (strain Angola)Imported
Taxonomic identifieri349746 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
ProteomesiUP000001204 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi349746.YpAngola_A3773.

Structurei

3D structure databases

ProteinModelPortaliA9R4F1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013583.
KOiK04564.
OMAiGTEWAEW.
OrthoDBiEOG63NMNT.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A9R4F1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYSLPSLPY AYDALEPHFD KQTMEIHHTK HHQTYVNNAN TVLESFPELA
60 70 80 90 100
DLSVEDLIKD LDKVPAEKRT FMRNNAGGHA NHSLFWKGLK LGTTLAGDLK
110 120 130 140 150
AAIERDFGSV DSFKEKFEQA AATRFGSGWA WLVLKDDGKL AVVSTANQDS
160 170 180 190 200
PLMGEAVSGV SGFPIVGLDV WEHAYYLKFQ NRRPDYIKAF WNVVNWDEAA

ARFAQAK
Length:207
Mass (Da):23,237
Last modified:February 5, 2008 - v1
Checksum:iAC8CDB4A452415F7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000901 Genomic DNA. Translation: ABX87972.1.
CP009935 Genomic DNA. Translation: AJJ84685.1.
RefSeqiYP_001608084.1. NC_010159.1.

Genome annotation databases

EnsemblBacteriaiABX87972; ABX87972; YpAngola_A3773.
KEGGiypg:YpAngola_A3773.
PATRICi18577259. VBIYerPes97331_4380.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000901 Genomic DNA. Translation: ABX87972.1.
CP009935 Genomic DNA. Translation: AJJ84685.1.
RefSeqiYP_001608084.1. NC_010159.1.

3D structure databases

ProteinModelPortaliA9R4F1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi349746.YpAngola_A3773.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABX87972; ABX87972; YpAngola_A3773.
KEGGiypg:YpAngola_A3773.
PATRICi18577259. VBIYerPes97331_4380.

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013583.
KOiK04564.
OMAiGTEWAEW.
OrthoDBiEOG63NMNT.

Enzyme and pathway databases

BioCyciYPES349746:GHPB-3783-MONOMER.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium."
    Eppinger M., Worsham P.L., Nikolich M.P., Riley D.R., Sebastian Y., Mou S., Achtman M., Lindler L.E., Ravel J.
    J. Bacteriol. 192:1685-1699(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AngolaImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: AngolaImported.

Entry informationi

Entry nameiA9R4F1_YERPG
AccessioniPrimary (citable) accession number: A9R4F1
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: April 1, 2015
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.