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Protein
Submitted name:

Ribulose bisphosphate carboxylase small subunit

Gene

cbbS

Organism
Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciMINF481448:GJEI-1288-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose bisphosphate carboxylase small subunitImported
Submitted name:
Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunitImported
Gene namesi
Name:cbbSImported
Synonyms:rbcSImported
Ordered Locus Names:Minf_1263Imported
OrganismiMethylacidiphilum infernorum (isolate V4) (Methylokorus infernorum (strain V4))Imported
Taxonomic identifieri481448 [NCBI]
Taxonomic lineageiBacteriaVerrucomicrobiaunclassified VerrucomicrobiaMethylacidiphilalesMethylacidiphilaceaeMethylacidiphilum
ProteomesiUP000009149 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi481448.Minf_1263.

Structurei

3D structure databases

ProteinModelPortaliA9QPF8.
SMRiA9QPF8. Positions 1-138.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG4451.
HOGENOMiHOG000141331.
KOiK01602.
OMAiYIPAVEF.
OrthoDBiEOG6RC3Q7.

Family and domain databases

Gene3Di3.30.190.10. 1 hit.
InterProiIPR000894. RuBisCO_sc_dom.
[Graphical view]
PfamiPF00101. RuBisCO_small. 1 hit.
[Graphical view]
SMARTiSM00961. RuBisCO_small. 1 hit.
[Graphical view]
SUPFAMiSSF55239. SSF55239. 1 hit.

Sequencei

Sequence statusi: Complete.

A9QPF8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRITQGTFSY LPDLTDEEIA AQVQYIIDQG WSIMIEYTDN PHPRHTYWDM
60 70 80 90 100
WGLPLFDIKD PAAVMQELNE CRKAYPNHYI RISGYNRQQG YQTTMISFIC
110 120 130 140
NRPKEEPGFE LVRTEWADRQ QKYQLKPYAI DKPKGQRYKS
Length:140
Mass (Da):16,717
Last modified:February 4, 2008 - v1
Checksum:iE95FBA11AB293F95
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU223874 Genomic DNA. Translation: ABX56616.1.
CP000975 Genomic DNA. Translation: ACD83317.1.
RefSeqiYP_001939915.1. NC_010794.1.

Genome annotation databases

EnsemblBacteriaiACD83317; ACD83317; Minf_1263.
GeneIDi6352198.
KEGGimin:Minf_1263.
PATRICi22491665. VBIMetInf111569_1319.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU223874 Genomic DNA. Translation: ABX56616.1.
CP000975 Genomic DNA. Translation: ACD83317.1.
RefSeqiYP_001939915.1. NC_010794.1.

3D structure databases

ProteinModelPortaliA9QPF8.
SMRiA9QPF8. Positions 1-138.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi481448.Minf_1263.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACD83317; ACD83317; Minf_1263.
GeneIDi6352198.
KEGGimin:Minf_1263.
PATRICi22491665. VBIMetInf111569_1319.

Phylogenomic databases

eggNOGiCOG4451.
HOGENOMiHOG000141331.
KOiK01602.
OMAiYIPAVEF.
OrthoDBiEOG6RC3Q7.

Enzyme and pathway databases

BioCyciMINF481448:GJEI-1288-MONOMER.

Family and domain databases

Gene3Di3.30.190.10. 1 hit.
InterProiIPR000894. RuBisCO_sc_dom.
[Graphical view]
PfamiPF00101. RuBisCO_small. 1 hit.
[Graphical view]
SMARTiSM00961. RuBisCO_small. 1 hit.
[Graphical view]
SUPFAMiSSF55239. SSF55239. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: V4Imported.
  2. "Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia."
    Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V., Wolf Y.I., Yutin N., Koonin E.V., Stott M.B., Mountain B.W., Crowe M.A., Smirnova A.V., Dunfield P.F.
    , Feng L., Wang L., Alam M.
    Biol. Direct 3:26-26(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Isolate V4Imported and V4Imported.

Entry informationi

Entry nameiA9QPF8_METI4
AccessioniPrimary (citable) accession number: A9QPF8
Entry historyi
Integrated into UniProtKB/TrEMBL: February 4, 2008
Last sequence update: February 4, 2008
Last modified: January 6, 2015
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.